Databases

Coccomyxa subellipsoidea C-169

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: CsubellipsoideaC_169_227_v2.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CsubellipsoideaCyc

Content Statistics

Number of Pathways:

339

Number of Reactions:

2489

Number of Compounds:

1971

Number of Enzymes:

2373

Number of Citations:

3357

ApunctatusCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Anthoceros punctatus

Protein Sequence Source:

Hornwort genomes: Apunct_genome_PROT.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

ApunctatusCyc

Content Statistics

Number of Pathways:

305

Number of Reactions:

1755

Number of Compounds:

1502

Number of Enzymes:

1451

Number of Citations:

2528

LerCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis thaliana Ler

Protein Sequence Source:

NCBI: a_thaliana_thale_cress_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LerCyc

Content Statistics

Number of Pathways:

524

Number of Reactions:

3253

Number of Compounds:

2992

Number of Enzymes:

7073

Number of Citations:

8604

McommodaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Micromonas commoda

Protein Sequence Source:

Phytozome v12: MspRCC299_229_v3.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

McommodaCyc

Content Statistics

Number of Pathways:

325

Number of Reactions:

2300

Number of Compounds:

1865

Number of Enzymes:

2176

Number of Citations:

3118

GrapeCyc 11.0.0

Parent

Overview

Released:

Taxonomic Range:

Vitis vinifera

Protein Sequence Source:

Ensembl Plants v54:Vitis_vinifera.PN40024.v4.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

GrapeCyc

Content Statistics

Number of Pathways:

535

Number of Reactions:

3471

Number of Compounds:

2834

Number of Enzymes:

9360

Number of Citations:

4753

HaasAvocadoCyc 1.0.0

Parent

Overview

Released:

Persea americana americana

Taxonomic Range:

Protein Sequence Source:

CoGe: 29302-CDS-prot.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

HaasAvocadoCyc

Content Statistics

Number of Pathways:

318

Number of Reactions:

1839

Number of Compounds:

1581

Number of Enzymes:

1155

Number of Citations:

2680

ObarthiiCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza barthii

Protein Sequence Source:

Ensembl: Oryza_barthii.O.barthii_v1.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ObarthiiCyc

Content Statistics

Number of Pathways:

493

Number of Reactions:

3097

Number of Compounds:

2314

Number of Enzymes:

7994

Number of Citations:

3954

RedcloverCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Trifolium pratense

Protein Sequence Source:

Phytozome v12: Tpratense_385_v2.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RedcloverCyc

Content Statistics

Number of Pathways:

575

Number of Reactions:

3796

Number of Compounds:

3040

Number of Enzymes:

9072

Number of Citations:

4923

WatermelonCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Citrullus lanatus

Protein Sequence Source:

CuGenDB: WCG_protein_v2.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

WatermelonCyc

Content Statistics

Number of Pathways:

486

Number of Reactions:

3108

Number of Compounds:

2546

Number of Enzymes:

4786

Number of Citations:

4283

PhalliiCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Panicum hallii

Protein Sequence Source:

Phytozome v13Phallii_590_v3.2.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PhalliiCyc

Content Statistics

Number of Pathways:

480

Number of Reactions:

2933

Number of Compounds:

2238

Number of Enzymes:

8632

Number of Citations:

RedsageCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Salvia miltiorrhiza

Protein Sequence Source:

Herbal Medicine Omics Database: danshen.pep (file no longer available for download online)

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RedsageCyc

Content Statistics

Number of Pathways:

516

Number of Reactions:

3371

Number of Compounds:

2731

Number of Enzymes:

7233

Number of Citations:

4462

SoleraceaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Spinacia oleracea

Protein Sequence Source:

The Beta vulgaris Resource: SpiSet-1.genes.1408.pep‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SoleraceaCyc

Content Statistics

Number of Pathways:

490

Number of Reactions:

3016

Number of Compounds:

2228

Number of Enzymes:

5238

Number of Citations:

4032

CcampestrisCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Cuscuta campestris

Protein Sequence Source:

Cuscuta campestris Genome Project: data_cucam_0.32.annot.protein.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CcampestrisCyc

Content Statistics

Number of Pathways:

470

Number of Reactions:

2901

Number of Compounds:

2155

Number of Enzymes:

9592

Number of Citations:

3673

PineappleCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Ananas comosus

Protein Sequence Source:

Phytozome v12: Acomosus_321_v3.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PineappleCyc

Content Statistics

Number of Pathways:

481

Number of Reactions:

3082

Number of Compounds:

2484

Number of Enzymes:

5511

Number of Citations:

4218

ValleyoakCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Quercus lobata

Protein Sequence Source:

Valley Oak Genome Project: Qlobata.v3.0.PCG.prot.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ValleyoakCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

3063

Number of Compounds:

2376

Number of Enzymes:

9378

Number of Citations:

CvariabilisCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Chlorella variabilis NC64A

Protein Sequence Source:

JGI: Chlorella_NC64A.fix_proteins.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CvariabilisCyc

Content Statistics

Number of Pathways:

334

Number of Reactions:

2441

Number of Compounds:

1756

Number of Enzymes:

17511

Number of Citations:

2938

CzofingiensisCyc 3.0.0

Parent

Overview

Released:

Chromochloris zofingiensis

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Czofingiensis_461_v5.2.3.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CzofingiensisCyc

Content Statistics

Number of Pathways:

358

Number of Reactions:

2773

Number of Compounds:

2204

Number of Enzymes:

3198

Number of Citations:

3416

AangustusCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Anthoceros angustus

Protein Sequence Source:

Data Dryad: Anthoceros.angustus.coding.gene.pep

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

AangustusCyc

Content Statistics

Number of Pathways:

284

Number of Reactions:

1587

Number of Compounds:

1385

Number of Enzymes:

640

Number of Citations:

2431

LettuceCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Lactuca sativa

Protein Sequence Source:

Phytozome 12: Lsativa_467_v5.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LettuceCyc

Content Statistics

Number of Pathways:

502

Number of Reactions:

3161

Number of Compounds:

2354

Number of Enzymes:

14374

Number of Citations:

3869

BananaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Musa acuminata

Protein Sequence Source:

Phytozome v12: Macuminata_304_v1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BananaCyc

Content Statistics

Number of Pathways:

500

Number of Reactions:

3159

Number of Compounds:

2539

Number of Enzymes:

9872

Number of Citations:

4325

LjaponicusCyc 5.0.0

Parent

Overview

Released:

Taxonomic Range:

Lotus japonicus

Protein Sequence Source:

Phytozome v13: Ljaponicus_571_Lj1.0v1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LjaponicusCyc

Content Statistics

Number of Pathways:

513

Number of Reactions:

3195

Number of Compounds:

2593

Number of Enzymes:

6690

Number of Citations:

4345

HuskTomatoCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Physalis pubescens

Protein Sequence Source:

NGDC: GWHANUX00000000.Protein.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

HuskTomatoCyc

Content Statistics

Number of Pathways:

334

Number of Reactions:

1916

Number of Compounds:

1670

Number of Enzymes:

1362

Number of Citations:

2892

ObrachyanthaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza brachyantha

Protein Sequence Source:

EnsemblPlants v34: Oryza_brachyantha.Oryza_brachyantha.v1.4b.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ObrachyanthaCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3034

Number of Compounds:

2281

Number of Enzymes:

6227

Number of Citations:

3927

BreadwheatCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Triticum aestivum

Protein Sequence Source:

Phytozome v11 (early): Taestivum_296_v2.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BreadwheatCyc

Content Statistics

Number of Pathways:

576

Number of Reactions:

3888

Number of Compounds:

3158

Number of Enzymes:

30897

Number of Citations:

5116

ObarthiiCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Oryza barthii

Protein Sequence Source:

Ensembl: Oryza_barthii.O.barthii_v1.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ObarthiiCyc

Content Statistics

Number of Pathways:

506

Number of Reactions:

3306

Number of Compounds:

2686

Number of Enzymes:

7943

Number of Citations:

4456

PigeonpeaCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Cajanus Cajan

Protein Sequence Source:

Legume Information System: cajca.ICPL87119.gnm1.ann1.Y27M.protein_main.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PigeonpeaCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3157

Number of Compounds:

2345

Number of Enzymes:

7345

Number of Citations:

3930

BananaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Musa acuminata

Protein Sequence Source:

Phytozome v12: Macuminata_304_v1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BananaCyc

Content Statistics

Number of Pathways:

480

Number of Reactions:

3027

Number of Compounds:

2266

Number of Enzymes:

9952

Number of Citations:

3875

HopCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Humulus lupulus

Protein Sequence Source:

HopBase v1.1: natsume.shinsuwase.v1.1.20160111.pep

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

HopCyc

Content Statistics

Number of Pathways:

526

Number of Reactions:

3517

Number of Compounds:

2838

Number of Enzymes:

12061

Number of Citations:

4585

SorghumbicolorCyc 7.1.1

Parent

Overview

Released:

Taxonomic Range:

Sorghum bicolor

Protein Sequence Source:

Phytozome v12: Sbicolor_454_v3.1.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SorghumbicolorCyc

Content Statistics

Number of Pathways:

492

Number of Reactions:

3064

Number of Compounds:

2297

Number of Enzymes:

9925

Number of Citations:

3887

CcapsularisCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Corchorus capsularis

Protein Sequence Source:

EnsemblPlants v38: Corchorus_capsularis.CCACVL1_1.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CcapsularisCyc

Content Statistics

Number of Pathways:

482

Number of Reactions:

2966

Number of Compounds:

2175

Number of Enzymes:

5217

Number of Citations:

3859

AhypochondriacusCyc 4.0.0

Parent

Overview

Released:

Amaranthus hypochondriacus

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Ahypochondriacus_459_v2.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AhypochondriacusCyc

Content Statistics

Number of Pathways:

502

Number of Reactions:

3144

Number of Compounds:

2560

Number of Enzymes:

5422

Number of Citations:

4463

VcarteriCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Volvox carteri

Protein Sequence Source:

Phytozome v12: Vcarteri_317_v2.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

VcarteriCyc

Content Statistics

Number of Pathways:

321

Number of Reactions:

2272

Number of Compounds:

1635

Number of Enzymes:

2804

Number of Citations:

2788

CzofingiensisCyc 2.0.2

Parent

Overview

Released:

Chromochloris zofingiensis

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Czofingiensis_461_v5.2.3.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CzofingiensisCyc

Content Statistics

Number of Pathways:

332

Number of Reactions:

2567

Number of Compounds:

1925

Number of Enzymes:

2971

Number of Citations:

2920

CarrotCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Daucus carota

Protein Sequence Source:

Phytozome v12: Dcarota_388_v2.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CarrotCyc

Content Statistics

Number of Pathways:

497

Number of Reactions:

3233

Number of Compounds:

2617

Number of Enzymes:

7166

Number of Citations:

4412

SweetWormwoodCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Artemisia annua

Protein Sequence Source:

NCBI Genome: GCA_003112345.1_ASM311234v1_protein.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SweetWormwoodCyc

Content Statistics

Number of Pathways:

420

Number of Reactions:

2566

Number of Compounds:

2176

Number of Enzymes:

2967

Number of Citations:

3541

LjaponicusCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Lotus japonicus

Protein Sequence Source:

Phytozome v13: Ljaponicus_571_Lj1.0v1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LjaponicusCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

2933

Number of Compounds:

2278

Number of Enzymes:

6684

Number of Citations:

175

Oeuropaea_sylvestrisCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Olea europaea

Protein Sequence Source:

Phytozome v12: Oeuropaea_451_v1.0.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

Oeuropaea_sylvestrisCyc

Content Statistics

Number of Pathways:

507

Number of Reactions:

3320

Number of Compounds:

2687

Number of Enzymes:

8601

Number of Citations:

4472

OilpalmCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Elaeis guineensis

Protein Sequence Source:

Plaza Monocots 5.0: proteome.all_transcripts.egu.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OilpalmCyc

Content Statistics

Number of Pathways:

467

Number of Reactions:

3041

Number of Compounds:

2440

Number of Enzymes:

6222

Number of Citations:

4127

BlackPepperCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Piper nigrum

Protein Sequence Source:

Group of Cotton Genetic Improvement: Piper_nigrum.pep

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

BlackPepperCyc

Content Statistics

Number of Pathways:

370

Number of Reactions:

2089

Number of Compounds:

1829

Number of Enzymes:

2380

Number of Citations:

3108

Oeuropaea_SylvestrisCyc 2.1.1

Parent

Overview

Released:

Olea europaea var. sylvestris

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Oeuropaea_451_v1.0.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

Oeuropaea_SylvestrisCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

3073

Number of Compounds:

2305

Number of Enzymes:

8643

Number of Citations:

3889

VcarteriCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Volvox carteri

Protein Sequence Source:

Phytozome v12: Vcarteri_317_v2.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

VcarteriCyc

Content Statistics

Number of Pathways:

358

Number of Reactions:

2732

Number of Compounds:

2115

Number of Enzymes:

3117

Number of Citations:

3442

OlongistaminataCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Oryza longistaminata

Protein Sequence Source:

Ensembl: Oryza_longistaminata.O_longistaminata_v1.0.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OlongistaminataCyc

Content Statistics

Number of Pathways:

511

Number of Reactions:

3274

Number of Compounds:

2697

Number of Enzymes:

6950

Number of Citations:

4441

PineappleCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Ananas comosus

Protein Sequence Source:

Phytozome v12: Acomosus_321_v3.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PineappleCyc

Content Statistics

Number of Pathways:

464

Number of Reactions:

2894

Number of Compounds:

2148

Number of Enzymes:

5698

Number of Citations:

3795

Boleracea_CapitataCyc 3.0.2

Parent

Overview

Released:

Brassica oleracea var. capitata

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Boleraceacapitata_446_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Boleracea_CapitataCyc

Content Statistics

Number of Pathways:

467

Number of Reactions:

2963

Number of Compounds:

2176

Number of Enzymes:

7598

Number of Citations:

3667

CvariabilisCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Chlorella variabilis

Protein Sequence Source:

JGI: Chlorella_NC64A.fix_proteins.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CvariabilisCyc

Content Statistics

Number of Pathways:

356

Number of Reactions:

2662

Number of Compounds:

2090

Number of Enzymes:

17711

Number of Citations:

3496

SoyCyc 10.1.0

Parent

Overview

Released:

Taxonomic Range:

Glycine max

Protein Sequence Source:

Phytozome v12: Gmax_275_Wm82.a2.v1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SoyCyc

Content Statistics

Number of Pathways:

589

Number of Reactions:

3472

Number of Compounds:

2698

Number of Enzymes:

19067

Number of Citations:

5316

CgiganteaCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Calotropis gigantea

Protein Sequence Source:

Medicinal Plant Genomics Resource: cal_hc_gene_models.rmscaff.repr.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CgiganteaCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

2985

Number of Compounds:

2227

Number of Enzymes:

4760

Number of Citations:

3871

AlyrataCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis lyrata

Protein Sequence Source:

Phytozome v12: Alyrata_384_v2.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AlyrataCyc

Content Statistics

Number of Pathways:

506

Number of Reactions:

3306

Number of Compounds:

2636

Number of Enzymes:

6990

Number of Citations:

4311

WatermelonCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Citrullus lanatus

Protein Sequence Source:

CuGenDB: WCG_protein_v2.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

WatermelonCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

2887

Number of Compounds:

2149

Number of Enzymes:

4917

Number of Citations:

3854

DatepalmCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Phoenix dactylifera

Protein Sequence Source:

Date Palm Research Program: PDK30-pep.fsa.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

DatepalmCyc

Content Statistics

Number of Pathways:

466

Number of Reactions:

2891

Number of Compounds:

2162

Number of Enzymes:

6043

Number of Citations:

3824

EgrandisCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Eucalyptus grandis

Protein Sequence Source:

Phytozome v12: Egrandis_297_v2.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EgrandisCyc

Content Statistics

Number of Pathways:

520

Number of Reactions:

3406

Number of Compounds:

2782

Number of Enzymes:

12168

Number of Citations:

4477

JackfruitCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Artocarpus heterophyllus

Protein Sequence Source:

AOCC: Arthe_prot_LATEST.tfa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

JackfruitCyc

Content Statistics

Number of Pathways:

371

Number of Reactions:

2182

Number of Compounds:

1906

Number of Enzymes:

1667

Number of Citations:

3173

LperrieriCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Leersia perrieri

Protein Sequence Source:

EnsemblPlants v34: Leersia_perrieri.Lperr_V1.4.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LperrieriCyc

Content Statistics

Number of Pathways:

488

Number of Reactions:

3018

Number of Compounds:

2258

Number of Enzymes:

8210

Number of Citations:

3902

OlucimarinusCyc 4.0.0

Parent

Overview

Released:

Ostreococcus sp. lucimarinus

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Olucimarinus_231_v2.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OlucimarinusCyc

Content Statistics

Number of Pathways:

312

Number of Reactions:

2119

Number of Compounds:

1743

Number of Enzymes:

1797

Number of Citations:

3017

PhalliiCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Panicum hallii

Protein Sequence Source:

Phytozome v13Phallii_590_v3.2.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PhalliiCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3272

Number of Compounds:

2643

Number of Enzymes:

8553

Number of Citations:

4373

RosemaryCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Salvia rosmarinus

Protein Sequence Source:

Data Dryad: ros_aa.gene_models.hc.pep.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RosemaryCyc

Content Statistics

Number of Pathways:

392

Number of Reactions:

2295

Number of Compounds:

1936

Number of Enzymes:

2441

Number of Citations:

3337

OglaberrimaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza glaberrima

Protein Sequence Source:

EnsemblPlants v34: Oryza_glaberrima.AGI1.1.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OglaberrimaCyc

Content Statistics

Number of Pathways:

494

Number of Reactions:

3042

Number of Compounds:

2288

Number of Enzymes:

6512

Number of Citations:

3921

CcampestrisCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Cuscuta campestris

Protein Sequence Source:

Cuscuta campestris Genome Project: data_cucam_0.32.annot.protein.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CcampestrisCyc

Content Statistics

Number of Pathways:

515

Number of Reactions:

3426

Number of Compounds:

2789

Number of Enzymes:

9559

Number of Citations:

4523

OmeridionalisCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Oryza meridionalis

Protein Sequence Source:

Ensembl: Oryza_meridionalis.Oryza_meridionalis_v1.3.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OmeridionalisCyc

Content Statistics

Number of Pathways:

482

Number of Reactions:

3119

Number of Compounds:

2595

Number of Enzymes:

8563

Number of Citations:

4305

PoplarCyc 13.0.0

Parent

Overview

Released:

Populus trichocarpa, other Populus species and hybrids

Taxonomic Range:

Protein Sequence Source:

Phytozome v13:Ptrichocarpa_533_v4.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PoplarCyc

Content Statistics

Number of Pathways:

494

Number of Reactions:

3048

Number of Compounds:

2340

Number of Enzymes:

11838

Number of Citations:

557

Boleracea_OleraceaCyc 3.0.2

Parent

Overview

Released:

Brassica oleracea var. oleracea

Taxonomic Range:

Protein Sequence Source:

EnsemblPlants v34: Brassica_oleracea.v2.1.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Boleracea_OleraceaCyc

Content Statistics

Number of Pathways:

481

Number of Reactions:

3136

Number of Compounds:

2292

Number of Enzymes:

12263

Number of Citations:

3709

SweetcherryCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Prunus avium

Protein Sequence Source:

PAV_r1.0.proteins.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SweetcherryCyc

Content Statistics

Number of Pathways:

521

Number of Reactions:

3326

Number of Compounds:

2695

Number of Enzymes:

6897

Number of Citations:

4471

SpennelliiCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Solanum pennellii

Protein Sequence Source:

SGN: Spenn-v2-aa-annot.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SpennelliiCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3176

Number of Compounds:

2355

Number of Enzymes:

7450

Number of Citations:

4013

CgrandifloraCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Capsella grandiflora

Protein Sequence Source:

Phytozome v12: Cgrandiflora_266_v1.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CgrandifloraCyc

Content Statistics

Number of Pathways:

471

Number of Reactions:

2983

Number of Compounds:

2173

Number of Enzymes:

6121

Number of Citations:

3626

CashewCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Anacardium occidentale

Protein Sequence Source:

Phytozome v12: Aoccidentale_449_v0.9.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CashewCyc

Content Statistics

Number of Pathways:

518

Number of Reactions:

3414

Number of Compounds:

2757

Number of Enzymes:

19150

Number of Citations:

4571

WheataCyc 6.0.0

Parent

Overview

Released:

Taxonomic Range:

Triticum urartu

Protein Sequence Source:

EnsemblPlants v54: Triticum_urartu.IGDB.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

WheataCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

3028

Number of Compounds:

2342

Number of Enzymes:

11254

Number of Citations:

DrotundataCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Dioscorea rotundata

Protein Sequence Source:

EnsemblPlants v54: Dioscorea_rotundata.TDr96_F1_v2_PseudoChromosome.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

DrotundataCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3089

Number of Compounds:

2412

Number of Enzymes:

13229

Number of Citations:

EsalsugineumCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Eutrema salsugineum

Protein Sequence Source:

Phytozome v12: Esalsugineum_173_v1.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EsalsugineumCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

3193

Number of Compounds:

2527

Number of Enzymes:

6730

Number of Citations:

4047

BreadfruitCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Artocarpus altilis

Protein Sequence Source:

AOCC: Artal_prot_LATEST.tfa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

BreadfruitCyc

Content Statistics

Number of Pathways:

353

Number of Reactions:

2059

Number of Compounds:

1782

Number of Enzymes:

1540

Number of Citations:

3095

MbalbisianaCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Musa balbisiana

Protein Sequence Source:

Banana Genome Hub: PKW_pep.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MbalbisianaCyc

Content Statistics

Number of Pathways:

475

Number of Reactions:

2877

Number of Compounds:

2138

Number of Enzymes:

7049

Number of Citations:

3832

OthomaeumCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Oropetium thomaeum

Protein Sequence Source:

Phytozome v12: Othomaeum_386_v1.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OthomaeumCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3052

Number of Compounds:

2443

Number of Enzymes:

5409

Number of Citations:

4256

PoplarCyc 14.0.0

Parent

Overview

Released:

Taxonomic Range:

Populus trichocarpa

Protein Sequence Source:

Phytozome v13:Ptrichocarpa_533_v4.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PoplarCyc

Content Statistics

Number of Pathways:

524

Number of Reactions:

3367

Number of Compounds:

2703

Number of Enzymes:

12053

Number of Citations:

4697

WatermossCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Salvinia cucullata

Protein Sequence Source:

FernBase: Salvinia_cucullata.protein.highconfidence_v1.2.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

WatermossCyc

Content Statistics

Number of Pathways:

301

Number of Reactions:

1642

Number of Compounds:

1396

Number of Enzymes:

760

Number of Citations:

2447

OilpalmCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Elaeis guineensis

Protein Sequence Source:

Plaza Monocots 5.0: proteome.all_transcripts.egu.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OilpalmCyc

Content Statistics

Number of Pathways:

449

Number of Reactions:

2778

Number of Compounds:

2143

Number of Enzymes:

6350

Number of Citations:

RubbertreeCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Hevea brasiliensis

Protein Sequence Source:

Rubber Genome & Transcriptome Database: hevea_amino.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RubbertreeCyc

Content Statistics

Number of Pathways:

575

Number of Reactions:

3886

Number of Compounds:

3187

Number of Enzymes:

9880

Number of Citations:

5072

OnivaraCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Oryza nivara

Protein Sequence Source:

Ensembl: Oryza_nivara.Oryza_nivara_v1.0.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OnivaraCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3248

Number of Compounds:

2637

Number of Enzymes:

8988

Number of Citations:

4384

PotatoCyc 7.0.0

Parent

Overview

Released:

Taxonomic Range:

Solanum tuberosum

Protein Sequence Source:

Phytozome v13:Stuberosum_686_v6.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PotatoCyc

Content Statistics

Number of Pathways:

527

Number of Reactions:

3211

Number of Compounds:

2534

Number of Enzymes:

11608

Number of Citations:

835

CarnationCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Dianthus caryophyllus

Protein Sequence Source:

Kazusa Genome Database: DCA_r1.0_pep_woTE.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CarnationCyc

Content Statistics

Number of Pathways:

510

Number of Reactions:

3286

Number of Compounds:

2702

Number of Enzymes:

7737

Number of Citations:

4428

SpiderflowerCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Tarenaya hassleriana

Protein Sequence Source:

NCBI: GCF_000463585.1_ASM46358v1_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SpiderflowerCyc

Content Statistics

Number of Pathways:

472

Number of Reactions:

3017

Number of Compounds:

2210

Number of Enzymes:

9139

Number of Citations:

3643

ChinesecabbageCyc 8.0.0

Parent

Overview

Released:

Brassica rapa ssp. pekinensis

Taxonomic Range:

Protein Sequence Source:

BrassicaDB: Brara_Chiifu_V3.5_pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

ChinesecabbageCyc

Content Statistics

Number of Pathways:

471

Number of Reactions:

3040

Number of Compounds:

2309

Number of Enzymes:

20753

Number of Citations:

105

AsparagusCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Asparagus officinalis

Protein Sequence Source:

Phytozome v12: Aofficinalis_498_V1.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

AsparagusCyc

Content Statistics

Number of Pathways:

494

Number of Reactions:

3230

Number of Compounds:

2651

Number of Enzymes:

5732

Number of Citations:

4324

WheatdCyc 5.0.2

Parent

Overview

Released:

Taxonomic Range:

Aegilops tauschii

Protein Sequence Source:

EnsemblPlants v34: Aegilops_tauschii.ASM34733v1.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

WheatdCyc

Content Statistics

Number of Pathways:

520

Number of Reactions:

3611

Number of Compounds:

2703

Number of Enzymes:

57062

Number of Citations:

4060

EggplantCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Solanum melongena

Protein Sequence Source:

Kazusas Genome Database: SME_r2.5.1_pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

EggplantCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3215

Number of Compounds:

2372

Number of Enzymes:

6949

Number of Citations:

4089

MdomesticaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Malus domestica

Protein Sequence Source:

Phytozome v12: Mdomestica_196_v1.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MdomesticaCyc

Content Statistics

Number of Pathways:

524

Number of Reactions:

3485

Number of Compounds:

2814

Number of Enzymes:

10667

Number of Citations:

4591

AfilliculoidesCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Azolla filiculoides

Protein Sequence Source:

FernBase: Azolla_filiculoides.protein.highconfidence_v1.1.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

AfilliculoidesCyc

Content Statistics

Number of Pathways:

303

Number of Reactions:

1731

Number of Compounds:

1484

Number of Enzymes:

941

Number of Citations:

2673

McommodaCyc 3.0.2

Parent

Overview

Released:

Micromonas commoda RCC299

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: MspRCC299_229_v3.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

McommodaCyc

Content Statistics

Number of Pathways:

310

Number of Reactions:

2171

Number of Compounds:

1565

Number of Enzymes:

2044

Number of Citations:

2798

MossCyc 9.0.0

Parent

Overview

Released:

Taxonomic Range:

Physcomitrium patens

Protein Sequence Source:

Phytozome v12: Ppatens_318_v3.3.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

MossCyc

Content Statistics

Number of Pathways:

430

Number of Reactions:

3127

Number of Compounds:

2483

Number of Enzymes:

18964

Number of Citations:

3903

PotatoCyc 8.0.0

Parent

Overview

Released:

Taxonomic Range:

Solanum tuberosum

Protein Sequence Source:

Phytozome v13:Stuberosum_686_v6.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PotatoCyc

Content Statistics

Number of Pathways:

561

Number of Reactions:

3591

Number of Compounds:

2906

Number of Enzymes:

11678

Number of Citations:

5060

RyeCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Secale cereale

Protein Sequence Source:

NGDC: GWHASIY00000000.Protein.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RyeCyc

Content Statistics

Number of Pathways:

377

Number of Reactions:

2175

Number of Compounds:

1923

Number of Enzymes:

2070

Number of Citations:

3231

OilseedrapeCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Brassica napus

Protein Sequence Source:

EnsemblPlants v34: Brassica_napus.AST_PRJEB5043_v1.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OilseedrapeCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3240

Number of Compounds:

2400

Number of Enzymes:

21070

Number of Citations:

4014

Ntabacum_tn90Cyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Nicotiana tabacum

Protein Sequence Source:

SGN: Ntab-TN90_AYMY-SS_NGS.prot.annot.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Ntabacum_tn90Cyc

Content Statistics

Number of Pathways:

605

Number of Reactions:

4008

Number of Compounds:

3247

Number of Enzymes:

14074

Number of Citations:

5384

WheatDCyc 6.0.0

Parent

Overview

Released:

Taxonomic Range:

Aegilops tauschii

Protein Sequence Source:

EnsemblPlants v34: Aegilops_tauschii.ASM34733v1.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

WheatDCyc

Content Statistics

Number of Pathways:

546

Number of Reactions:

3808

Number of Compounds:

3083

Number of Enzymes:

81358

Number of Citations:

4851

PpersicaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Prunus persica

Protein Sequence Source:

Phytozome v12: Ppersica_298_v2.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PpersicaCyc

Content Statistics

Number of Pathways:

499

Number of Reactions:

3053

Number of Compounds:

2267

Number of Enzymes:

10923

Number of Citations:

3965

Brapa_FpscCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Brassica rapa FPsc

Protein Sequence Source:

Phytozome v12: BrapaFPsc_277_v1.3.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Brapa_FpscCyc

Content Statistics

Number of Pathways:

481

Number of Reactions:

3047

Number of Compounds:

2218

Number of Enzymes:

9765

Number of Citations:

3731

RmultifloraCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Rosa multiflora

Protein Sequence Source:

Kazusa Genome Database: RMU_r2.0.pep

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RmultifloraCyc

Content Statistics

Number of Pathways:

530

Number of Reactions:

3496

Number of Compounds:

2861

Number of Enzymes:

13808

Number of Citations:

4655

SpirodelaCyc 5.0.2

Parent

Overview

Released:

Taxonomic Range:

Spirodela polyrhiza

Protein Sequence Source:

Phytozome v12: Spolyrhiza_290_v2.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SpirodelaCyc

Content Statistics

Number of Pathways:

455

Number of Reactions:

2748

Number of Compounds:

2017

Number of Enzymes:

4413

Number of Citations:

3653

ChlamyCyc 10.0.0

Parent

Overview

Released:

Chlamydomonas reinhardtii

Taxonomic Range:

Protein Sequence Source:

Phytozome v13: CreinhardtiiCC_4532_707_v6.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

Link to PGDB:

ChlamyCyc

Content Statistics

Number of Pathways:

385

Number of Reactions:

2556

Number of Compounds:

1899

Number of Enzymes:

6413

Number of Citations:

3264

AmborellaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Amborella trichopoda

Protein Sequence Source:

Phytozome v12: Atrichopoda_291_v1.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AmborellaCyc

Content Statistics

Number of Pathways:

500

Number of Reactions:

3265

Number of Compounds:

2662

Number of Enzymes:

5242

Number of Citations:

4393

WildsugarcaneCyc 1.1.1

Parent

Overview

Released:

Taxonomic Range:

Saccharum spontanaeum

Protein Sequence Source:

The Ming Laboratory, University of Illinois: Sspon.v20190103.protein.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

WildsugarcaneCyc

Content Statistics

Number of Pathways:

500

Number of Reactions:

3217

Number of Compounds:

2422

Number of Enzymes:

19681

Number of Citations:

3953

EgrandisCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Eucalyptus grandis

Protein Sequence Source:

Phytozome v12: Egrandis_297_v2.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EgrandisCyc

Content Statistics

Number of Pathways:

506

Number of Reactions:

3136

Number of Compounds:

2355

Number of Enzymes:

11549

Number of Citations:

3983

EsalsugineumCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Eutrema salsugineum

Protein Sequence Source:

Phytozome v12: Esalsugineum_173_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EsalsugineumCyc

Content Statistics

Number of Pathways:

477

Number of Reactions:

3014

Number of Compounds:

2194

Number of Enzymes:

6877

Number of Citations:

3662

GraimondiiCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Gossypium raimondii

Protein Sequence Source:

Phytozome v12: Graimondii_221_v2.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

GraimondiiCyc

Content Statistics

Number of Pathways:

506

Number of Reactions:

3398

Number of Compounds:

2765

Number of Enzymes:

18360

Number of Citations:

4482

CamelinaCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Camelina sativa

Protein Sequence Source:

Ensembl: Camelina_sativa.Cs.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CamelinaCyc

Content Statistics

Number of Pathways:

415

Number of Reactions:

2715

Number of Compounds:

2263

Number of Enzymes:

4221

Number of Citations:

3697

MdomesticaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Malus domestica

Protein Sequence Source:

Phytozome v12: Mdomestica_196_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MdomesticaCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3179

Number of Compounds:

2392

Number of Enzymes:

10559

Number of Citations:

4068

PpersicaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Prunus persica

Protein Sequence Source:

Phytozome v12: Ppersica_298_v2.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PpersicaCyc

Content Statistics

Number of Pathways:

514

Number of Reactions:

3299

Number of Compounds:

2657

Number of Enzymes:

11142

Number of Citations:

4424

RchinensisCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Rosa chinensis

Protein Sequence Source:

Genome Database for Rosaceae: Rosa_chinensis_Old_Blush_homozygous_genome-v2.0.a1.prot.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RchinensisCyc

Content Statistics

Number of Pathways:

523

Number of Reactions:

3442

Number of Compounds:

2811

Number of Enzymes:

9617

Number of Citations:

4533

CoastRedwoodCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Sequoia sempervirens

Protein Sequence Source:

TreeGenes: SESE.2_1.peptides.fa.gz

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CoastRedwoodCyc

Content Statistics

Number of Pathways:

432

Number of Reactions:

2795

Number of Compounds:

2366

Number of Enzymes:

6617

Number of Citations:

3789

OlongistaminataCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza longistaminata

Protein Sequence Source:

Ensembl: Oryza_longistaminata.O_longistaminata_v1.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OlongistaminataCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3089

Number of Compounds:

2327

Number of Enzymes:

7031

Number of Citations:

3957

CannuumCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Capsicum annuum

Protein Sequence Source:

SGN: Pepper.v.1.55.PEP.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CannuumCyc

Content Statistics

Number of Pathways:

568

Number of Reactions:

3730

Number of Compounds:

3100

Number of Enzymes:

8134

Number of Citations:

5081

OilseedrapeCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Brassica napus

Protein Sequence Source:

EnsemblPlants v34: Brassica_napus.AST_PRJEB5043_v1.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OilseedrapeCyc

Content Statistics

Number of Pathways:

522

Number of Reactions:

3487

Number of Compounds:

2801

Number of Enzymes:

20946

Number of Citations:

4517

QuinoaCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Chenopodium quinoa

Protein Sequence Source:

Phytozome v12: Cquinoa_392_v1.0.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

QuinoaCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3141

Number of Compounds:

2357

Number of Enzymes:

10629

Number of Citations:

3952

EggplantCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Solanum melongena

Protein Sequence Source:

Kazusas Genome Database: SME_r2.5.1_pep.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

EggplantCyc

Content Statistics

Number of Pathways:

518

Number of Reactions:

3358

Number of Compounds:

2685

Number of Enzymes:

6997

Number of Citations:

4581

StoraCyc 1.0.1

Parent

Overview

Released:

Taxonomic Range:

Senna tora

Protein Sequence Source:

NABIC: SETOT.complete.protein.20191226.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

StoraCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

2878

Number of Compounds:

2200

Number of Enzymes:

6587

Number of Citations:

1713

ClementineCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Citrus clementina

Protein Sequence Source:

Phytozome v12: Cclementina_182_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ClementineCyc

Content Statistics

Number of Pathways:

488

Number of Reactions:

3042

Number of Compounds:

2271

Number of Enzymes:

8423

Number of Citations:

3911

Boleracea_capitataCyc 4.0.0

Parent

Overview

Released:

Brassica oleracea capitata

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Boleraceacapitata_446_v1.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Boleracea_capitataCyc

Content Statistics

Number of Pathways:

480

Number of Reactions:

3114

Number of Compounds:

2495

Number of Enzymes:

7628

Number of Citations:

4040

ZmarinaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Zostera marina

Protein Sequence Source:

Phytozome v13: Zmarina_668_v3.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ZmarinaCyc

Content Statistics

Number of Pathways:

436

Number of Reactions:

2637

Number of Compounds:

1994

Number of Enzymes:

4635

Number of Citations:

EuropeanpearCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Pyrus communis

Protein Sequence Source:

Genome Database for Rosaceae: PyrusCommunis_BartlettDHv2.0.pep.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EuropeanpearCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

2962

Number of Compounds:

2268

Number of Enzymes:

8263

Number of Citations:

SunflowerCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Helianthus annuus

Protein Sequence Source:

Phytozome v12: Hannuus_494_r1.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SunflowerCyc

Content Statistics

Number of Pathways:

524

Number of Reactions:

3440

Number of Compounds:

2779

Number of Enzymes:

11463

Number of Citations:

4623

ChinesecabbageCyc 9.0.0

Parent

Overview

Released:

Taxonomic Range:

Brassica rapa pekinensis

Protein Sequence Source:

BrassicaDB: Brara_Chiifu_V3.5_pep.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

ChinesecabbageCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3354

Number of Compounds:

2666

Number of Enzymes:

20905

Number of Citations:

4335

DrabaCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Draba nivalis

Protein Sequence Source:

Data Dryad: Dniva.Maker.Run5.all.proteins.NumberedGenes.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

DrabaCyc

Content Statistics

Number of Pathways:

333

Number of Reactions:

1901

Number of Compounds:

1691

Number of Enzymes:

1409

Number of Citations:

2833

MguttatusCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Mimulus guttatus

Protein Sequence Source:

Phytozome v12: Mguttatus_256_v2.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MguttatusCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

3074

Number of Compounds:

2338

Number of Enzymes:

7771

Number of Citations:

3858

SwitchgrassCyc 8.0.0

Parent

Overview

Released:

Taxonomic Range:

Panicum virgatum

Protein Sequence Source:

Phytozome v12: Pvirgatum_450_v4.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SwitchgrassCyc

Content Statistics

Number of Pathways:

530

Number of Reactions:

3492

Number of Compounds:

2866

Number of Enzymes:

25856

Number of Citations:

4660

SfallaxCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Sphagnum fallax

Protein Sequence Source:

Phytozome v13: Sfallax_522_v1.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SfallaxCyc

Content Statistics

Number of Pathways:

422

Number of Reactions:

2979

Number of Compounds:

2398

Number of Enzymes:

10646

Number of Citations:

3815

VanillaCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Vanilla planifolia

Protein Sequence Source:

NCBI Genome: GCA_016413895.1_Elo_Vpla-A_principal_1.0_protein.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

VanillaCyc

Content Statistics

Number of Pathways:

310

Number of Reactions:

1740

Number of Compounds:

1545

Number of Enzymes:

1069

Number of Citations:

2504

OlucimarinusCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Ostreococcus lucimarinus

Protein Sequence Source:

Phytozome v12: Olucimarinus_231_v2.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OlucimarinusCyc

Content Statistics

Number of Pathways:

294

Number of Reactions:

1953

Number of Compounds:

1425

Number of Enzymes:

1701

Number of Citations:

2747

PaxillarisCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Petunia axillaris

Protein Sequence Source:

SGN: Petunia_axillaris_v1.6.2_proteins.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PaxillarisCyc

Content Statistics

Number of Pathways:

570

Number of Reactions:

3788

Number of Compounds:

3024

Number of Enzymes:

8015

Number of Citations:

4898

Boleracea_oleraceaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Brassica oleracea

Protein Sequence Source:

EnsemblPlants v34: Brassica_oleracea.v2.1.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Boleracea_oleraceaCyc

Content Statistics

Number of Pathways:

504

Number of Reactions:

3319

Number of Compounds:

2645

Number of Enzymes:

12347

Number of Citations:

4247

RchinensisCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Rosa chinensis

Protein Sequence Source:

Genome Database for Rosaceae: Rosa_chinensis_Old_Blush_homozygous_genome-v2.0.a1.prot.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RchinensisCyc

Content Statistics

Number of Pathways:

495

Number of Reactions:

3095

Number of Compounds:

2411

Number of Enzymes:

9431

Number of Citations:

BstrictaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Boechera stricta

Protein Sequence Source:

Phytozome v12: Bstricta_278_v1.2.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BstrictaCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

3016

Number of Compounds:

2202

Number of Enzymes:

6506

Number of Citations:

3651

PigeonpeaCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Cajanus cajan

Protein Sequence Source:

Legume Information System: cajca.ICPL87119.gnm1.ann1.Y27M.protein_main.faa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PigeonpeaCyc

Content Statistics

Number of Pathways:

518

Number of Reactions:

3393

Number of Compounds:

2694

Number of Enzymes:

7445

Number of Citations:

4476

SugarbeetCyc 3.0.2

Parent

Overview

Released:

Beta vulgaris subsp. vulgaris

Taxonomic Range:

Protein Sequence Source:

The Beta vulgaris Resource: BeetSet-2.genes.1408.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SugarbeetCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3103

Number of Compounds:

2307

Number of Enzymes:

5718

Number of Citations:

3956

CocoaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Theobroma cacao

Protein Sequence Source:

Phytozome v12: Tcacao_233_v1.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CocoaCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3164

Number of Compounds:

2378

Number of Enzymes:

8866

Number of Citations:

4031

Brapa_fpscCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Brassica rapa

Protein Sequence Source:

Phytozome v12: BrapaFPsc_277_v1.3.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Brapa_fpscCyc

Content Statistics

Number of Pathways:

505

Number of Reactions:

3279

Number of Compounds:

2602

Number of Enzymes:

9667

Number of Citations:

4270

FlaxCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Linum usitatissimum

Protein Sequence Source:

Phytozome v12: Lusitatissimum_200_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

FlaxCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3230

Number of Compounds:

2430

Number of Enzymes:

10592

Number of Citations:

4056

KfedtschenkoiCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Kalanchoe fedtschenkoi

Protein Sequence Source:

Phytozome v12: Kfedtschenkoi_382_v1.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

KfedtschenkoiCyc

Content Statistics

Number of Pathways:

504

Number of Reactions:

3312

Number of Compounds:

2689

Number of Enzymes:

10403

Number of Citations:

4413

AhalleriCyc 5.0.0

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis halleri

Protein Sequence Source:

Phytozome v13: Ahalleri_765_v2.1.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AhalleriCyc

Content Statistics

Number of Pathways:

503

Number of Reactions:

3265

Number of Compounds:

2603

Number of Enzymes:

9302

Number of Citations:

4274

TeffCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Eragrostis tef

Protein Sequence Source:

CoGe: 50954-CDS-prot.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

TeffCyc

Content Statistics

Number of Pathways:

421

Number of Reactions:

2613

Number of Compounds:

2239

Number of Enzymes:

2903

Number of Citations:

3759

MosobambooCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Phyllostachys edulis

Protein Sequence Source:

GIGA DB: Bamboo.Hic.pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MosobambooCyc

Content Statistics

Number of Pathways:

484

Number of Reactions:

3108

Number of Compounds:

2337

Number of Enzymes:

12574

Number of Citations:

3865

CommonbeanCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Phaseolus vulgaris

Protein Sequence Source:

Phytozome v12: Pvulgaris_442_v2.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CommonbeanCyc

Content Statistics

Number of Pathways:

515

Number of Reactions:

3280

Number of Compounds:

2610

Number of Enzymes:

8794

Number of Citations:

4432

TeaCyc 3.0.0

Parent

Overview

Released:

Camellia sinensis sinensis

Taxonomic Range:

Protein Sequence Source:

Tea Plant Information Archive:

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

TeaCyc

Content Statistics

Number of Pathways:

513

Number of Reactions:

3285

Number of Compounds:

2669

Number of Enzymes:

10655

Number of Citations:

4437

BambaraBeanCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Vigna subterranea

Protein Sequence Source:

GigaDB: vigna_subterranea.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

BambaraBeanCyc

Content Statistics

Number of Pathways:

361

Number of Reactions:

2074

Number of Compounds:

1771

Number of Enzymes:

1400

Number of Citations:

3083

OmeridionalisCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza meridionalis

Protein Sequence Source:

Ensembl: Oryza_meridionalis.Oryza_meridionalis_v1.3.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OmeridionalisCyc

Content Statistics

Number of Pathways:

475

Number of Reactions:

2966

Number of Compounds:

2276

Number of Enzymes:

8608

Number of Citations:

3922

SpennelliiCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Solanum pennellii

Protein Sequence Source:

SGN: Spenn-v2-aa-annot.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SpennelliiCyc

Content Statistics

Number of Pathways:

559

Number of Reactions:

3714

Number of Compounds:

2986

Number of Enzymes:

7953

Number of Citations:

4830

CcapsularisCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Corchorus capsularis

Protein Sequence Source:

EnsemblPlants v38: Corchorus_capsularis.CCACVL1_1.0.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CcapsularisCyc

Content Statistics

Number of Pathways:

503

Number of Reactions:

3179

Number of Compounds:

2528

Number of Enzymes:

5256

Number of Citations:

4381

RedcloverCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Trifolium pratense

Protein Sequence Source:

Phytozome v12: Tpratense_385_v2.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RedcloverCyc

Content Statistics

Number of Pathways:

507

Number of Reactions:

3209

Number of Compounds:

2404

Number of Enzymes:

8860

Number of Citations:

3977

CacuminataCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Camptotheca acuminata

Protein Sequence Source:

Medicinal Plant Genomics Resource: Lachesis_assembly.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CacuminataCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

2913

Number of Compounds:

2247

Number of Enzymes:

6757

Number of Citations:

CgiganteaCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Calotropis gigantea

Protein Sequence Source:

Medicinal Plant Genomics Resource: cal_hc_gene_models.rmscaff.repr.pep

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CgiganteaCyc

Content Statistics

Number of Pathways:

490

Number of Reactions:

3205

Number of Compounds:

2601

Number of Enzymes:

4629

Number of Citations:

4236

SunflowerCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Helianthus annuus

Protein Sequence Source:

Phytozome v12: Hannuus_494_r1.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SunflowerCyc

Content Statistics

Number of Pathways:

497

Number of Reactions:

3134

Number of Compounds:

2328

Number of Enzymes:

11386

Number of Citations:

3904

CommonbeanCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Phaseolus vulgaris

Protein Sequence Source:

Phytozome v12: Pvulgaris_442_v2.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CommonbeanCyc

Content Statistics

Number of Pathways:

501

Number of Reactions:

3089

Number of Compounds:

2283

Number of Enzymes:

8709

Number of Citations:

3968

BstrictaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Boechera stricta

Protein Sequence Source:

Phytozome v12: Bstricta_278_v1.2.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BstrictaCyc

Content Statistics

Number of Pathways:

492

Number of Reactions:

3190

Number of Compounds:

2531

Number of Enzymes:

6734

Number of Citations:

4120

AraCyc 18.0.0

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis thaliana col

Protein Sequence Source:

AraPort v11: Araport11_genes.201606.pep.repr.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AraCyc

Content Statistics

Number of Pathways:

618

Number of Reactions:

3837

Number of Compounds:

3080

Number of Enzymes:

10038

Number of Citations:

7656

ChlamyCyc 11.0.0

Parent

Overview

Released:

Chlamydomonas reinhardtii

Taxonomic Range:

Protein Sequence Source:

Phytozome v13: CreinhardtiiCC_4532_707_v6.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

Link to PGDB:

ChlamyCyc

Content Statistics

Number of Pathways:

375

Number of Reactions:

2854

Number of Compounds:

2081

Number of Enzymes:

6633

Number of Citations:

4270

Fvesca_VescaCyc 4.0.0

Parent

Overview

Released:

Fragaria vesca subsp. Vesca

Taxonomic Range:

Protein Sequence Source:

Phytozome v13: Fvesca_677_v4.0.a2.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Fvesca_VescaCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3002

Number of Compounds:

2300

Number of Enzymes:

13895

Number of Citations:

KlaxifloraCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Kalanchoe laxiflora

Protein Sequence Source:

Phytozome v12: Klaxiflora_309_v1.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

KlaxifloraCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3294

Number of Compounds:

2670

Number of Enzymes:

16221

Number of Citations:

4470

BarleyCyc 9.0.0

Parent

Overview

Released:

Taxonomic Range:

Hordeum vulgare

Protein Sequence Source:

EnsemblPlants v55: Hordeum_vulgare.MorexV3_pseudomolecules_assembly.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

BarleyCyc

Content Statistics

Number of Pathways:

493

Number of Reactions:

3092

Number of Compounds:

2519

Number of Enzymes:

7893

Number of Citations:

4373

AppleRingAcaciaCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Faidherbia albida

Protein Sequence Source:

GigaDB: Faidherbia_albida.pep

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

AppleRingAcaciaCyc

Content Statistics

Number of Pathways:

367

Number of Reactions:

2071

Number of Compounds:

1771

Number of Enzymes:

1410

Number of Citations:

3125

MossCyc 8.0.2

Parent

Overview

Released:

Taxonomic Range:

Physcomitrella patens

Protein Sequence Source:

Phytozome v12: Ppatens_318_v3.3.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

MossCyc

Content Statistics

Number of Pathways:

415

Number of Reactions:

2868

Number of Compounds:

2043

Number of Enzymes:

17888

Number of Citations:

3350

CastorbeanCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Ricinus communis

Protein Sequence Source:

Phytozome v12: Rcommunis_119_v0.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CastorbeanCyc

Content Statistics

Number of Pathways:

532

Number of Reactions:

4034

Number of Compounds:

3254

Number of Enzymes:

6978

Number of Citations:

4998

TomatoCyc 7.0.0

Parent

Overview

Released:

Taxonomic Range:

Solanum lycopersicum

Protein Sequence Source:

SGN: ITAG4.1_proteins.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

TomatoCyc

Content Statistics

Number of Pathways:

562

Number of Reactions:

3546

Number of Compounds:

2870

Number of Enzymes:

7671

Number of Citations:

4880

StoraCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Senna tora

Protein Sequence Source:

NABIC: SETOT.complete.protein.20191226.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

StoraCyc

Content Statistics

Number of Pathways:

345

Number of Reactions:

1961

Number of Compounds:

1696

Number of Enzymes:

1356

Number of Citations:

2982

OnivaraCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza nivara

Protein Sequence Source:

Ensembl: Oryza_nivara.Oryza_nivara_v1.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OnivaraCyc

Content Statistics

Number of Pathways:

495

Number of Reactions:

3076

Number of Compounds:

2293

Number of Enzymes:

9055

Number of Citations:

3947

SugarbeetCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Beta vulgaris vulgaris

Protein Sequence Source:

The Beta vulgaris Resource: BeetSet-2.genes.1408.pep

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SugarbeetCyc

Content Statistics

Number of Pathways:

527

Number of Reactions:

3529

Number of Compounds:

2849

Number of Enzymes:

5707

Number of Citations:

4726

LperrieriCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Leersia perrieri

Protein Sequence Source:

EnsemblPlants v34: Leersia_perrieri.Lperr_V1.4.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LperrieriCyc

Content Statistics

Number of Pathways:

507

Number of Reactions:

3248

Number of Compounds:

2660

Number of Enzymes:

8095

Number of Citations:

4324

RedsageCyc 3.0.2

Parent

Overview

Released:

Salvia miltiorrhiza Bunge

Taxonomic Range:

Protein Sequence Source:

Herbal Medicine Omics Database: danshen.pep (file no longer available for download online)

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RedsageCyc

Content Statistics

Number of Pathways:

495

Number of Reactions:

3178

Number of Compounds:

2397

Number of Enzymes:

7361

Number of Citations:

3892

CannuumCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Capsicum annuum

Protein Sequence Source:

SGN: Pepper.v.1.55.PEP.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CannuumCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3147

Number of Compounds:

2419

Number of Enzymes:

8164

Number of Citations:

4155

CroseusCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Catharanthus roseus

Protein Sequence Source:

Medicinal Plant Genomics Resource: cro_ap_asm_v2.proteins.fasta

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CroseusCyc

Content Statistics

Number of Pathways:

515

Number of Reactions:

3318

Number of Compounds:

2702

Number of Enzymes:

5411

Number of Citations:

4499

SviridisCyc 3.1.1

Parent

Overview

Released:

Taxonomic Range:

Setaria viridis

Protein Sequence Source:

Phytozome v12: Sviridis_500_v2.1.protein_primaryTranscriptOnly.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SviridisCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

3072

Number of Compounds:

2274

Number of Enzymes:

10539

Number of Citations:

3846

CorkoakCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Quercus suber

Protein Sequence Source:

NCBI: GCF_002906115.1_CorkOak1.0_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CorkoakCyc

Content Statistics

Number of Pathways:

522

Number of Reactions:

3978

Number of Compounds:

2999

Number of Enzymes:

14428

Number of Citations:

4100

ClementineCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Citrus x clementina

Protein Sequence Source:

Phytozome v12: Cclementina_182_v1.0.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ClementineCyc

Content Statistics

Number of Pathways:

510

Number of Reactions:

3308

Number of Compounds:

2672

Number of Enzymes:

8480

Number of Citations:

4426

CornCyc 12.0.0

Parent

Overview

Released:

Taxonomic Range:

Zea mays mays

Protein Sequence Source:

EnsemblPlants v55: Zea_mays.Zm-B73-REFERENCE-NAM-5.0.pep.all.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

Link to PGDB:

CornCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3475

Number of Compounds:

2769

Number of Enzymes:

16347

Number of Citations:

5238

GinkgoCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Ginkgo biloba

Protein Sequence Source:

GIGA DB: Ginkgo_biloba.HiC.protein.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

GinkgoCyc

Content Statistics

Number of Pathways:

453

Number of Reactions:

2958

Number of Compounds:

2225

Number of Enzymes:

7884

Number of Citations:

3674

LettuceCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Lactuca sativa

Protein Sequence Source:

Phytozome 12: Lsativa_467_v5.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LettuceCyc

Content Statistics

Number of Pathways:

519

Number of Reactions:

3429

Number of Compounds:

2790

Number of Enzymes:

14776

Number of Citations:

4541

BrachypodiumCyc 9.0.0

Parent

Overview

Released:

Taxonomic Range:

Brachypodium distachyon

Protein Sequence Source:

Phytozome v13:Bdistachyon_314_v3.1.protein.fa

Enzyme Functional Annotation Method:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

BrachypodiumCyc

Content Statistics

Number of Pathways:

500

Number of Reactions:

3246

Number of Compounds:

2638

Number of Enzymes:

12097

Number of Citations:

4341

StrawberryCyc 1.0.0

Parent

Overview

Released:

Taxonomic Range:

Fragaria x ananassa

Protein Sequence Source:

GDR: Fragaria_ananassa_v1.0.a2.proteins.fa

Enzyme Functional Annotation Method: