MpolymorphaCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Marchantia polymorphaProtein Sequence Source: Phytozome v12: Mpolymorpha_320_v3.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: MpolymorphaCyc Content StatisticsNumber of Pathways: 422Number of Reactions: 2711Number of Compounds: 1992Number of Enzymes: 4841Number of Citations: 3392
PhalliiCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Panicum halliiProtein Sequence Source: Phytozome v12: PhalliiHAL_496_v2.1.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: PhalliiCyc Content StatisticsNumber of Pathways: 481Number of Reactions: 3022Number of Compounds: 2241Number of Enzymes: 8704Number of Citations: 3832
SpennelliiCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Solanum pennelliiProtein Sequence Source: SGN: Spenn-v2-aa-annot.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SpennelliiCyc Content StatisticsNumber of Pathways: 508Number of Reactions: 3176Number of Compounds: 2357Number of Enzymes: 7450Number of Citations: 3994
BananaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Musa acuminataProtein Sequence Source: Banana Genome Hub: musa_acuminata_v2_prot.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: BananaCyc Content StatisticsNumber of Pathways: 480Number of Reactions: 3027Number of Compounds: 2268Number of Enzymes: 9952Number of Citations: 3856
DatepalmCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Phoenix dactyliferaProtein Sequence Source: Date Palm Research Program: PDK30-pep.fsa.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: DatepalmCyc Content StatisticsNumber of Pathways: 466Number of Reactions: 2891Number of Compounds: 2164Number of Enzymes: 6043Number of Citations: 3805
CcapsularisCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Corchorus capsularisProtein Sequence Source: EnsemblPlants v38: Corchorus_capsularis.CCACVL1_1.0.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CcapsularisCyc Content StatisticsNumber of Pathways: 482Number of Reactions: 2966Number of Compounds: 2177Number of Enzymes: 5217Number of Citations: 3840
SpiderflowerCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Tarenaya hasslerianaProtein Sequence Source: NCBI: GCF_000463585.1_ASM46358v1_protein.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: SpiderflowerCyc Content StatisticsNumber of Pathways: 472Number of Reactions: 3017Number of Compounds: 2212Number of Enzymes: 9139Number of Citations: 3623
EggplantCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Solanum melongenaProtein Sequence Source: Kazusas Genome Database: SME_r2.5.1_pep.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: EggplantCyc Content StatisticsNumber of Pathways: 508Number of Reactions: 3215Number of Compounds: 2375Number of Enzymes: 6949Number of Citations: 4070
MpusillaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Micromonas pusilla CCMP1545Protein Sequence Source: Phytozome v12: MpusillaCCMP1545_228_v3.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: MpusillaCyc Content StatisticsNumber of Pathways: 301Number of Reactions: 2085Number of Compounds: 1539Number of Enzymes: 1971Number of Citations: 2755
PineappleCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Ananas comosusProtein Sequence Source: Phytozome v12: Acomosus_321_v3.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: PineappleCyc Content StatisticsNumber of Pathways: 464Number of Reactions: 2894Number of Compounds: 2149Number of Enzymes: 5698Number of Citations: 3776
SpirodelaCyc 5.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Spirodela polyrhizaProtein Sequence Source: Phytozome v12: Spolyrhiza_290_v2.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SpirodelaCyc Content StatisticsNumber of Pathways: 455Number of Reactions: 2748Number of Compounds: 2018Number of Enzymes: 4413Number of Citations: 3634
BarleyCyc 7.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Hordeum vulgareProtein Sequence Source: EnsemblPlants v38: Hordeum_vulgare.IBSC_v2.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: BarleyCyc Content StatisticsNumber of Pathways: 519Number of Reactions: 3489Number of Compounds: 2642Number of Enzymes: 57690Number of Citations: 4023
EuropeanpearCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Pyrus communisProtein Sequence Source: Genome Database for Rosaceae: Pyrus_communis_v1.0-proteins_hybrid.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: EuropeanpearCyc Content StatisticsNumber of Pathways: 497Number of Reactions: 3132Number of Compounds: 2322Number of Enzymes: 10116Number of Citations: 3949
CgiganteaCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Calotropis giganteaProtein Sequence Source: Medicinal Plant Genomics Resource: cal_hc_gene_models.rmscaff.repr.pep Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CgiganteaCyc Content StatisticsNumber of Pathways: 483Number of Reactions: 2985Number of Compounds: 2230Number of Enzymes: 4760Number of Citations: 3852
SweetcherryCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Prunis aviumProtein Sequence Source: PAV_r1.0.proteins.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: SweetcherryCyc Content StatisticsNumber of Pathways: 501Number of Reactions: 3130Number of Compounds: 2342Number of Enzymes: 6757Number of Citations: 3966
EgrandisCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Eucalyptus grandisProtein Sequence Source: Phytozome v12: Egrandis_297_v2.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: EgrandisCyc Content StatisticsNumber of Pathways: 506Number of Reactions: 3136Number of Compounds: 2357Number of Enzymes: 11549Number of Citations: 3964
MsinensisCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Miscanthus sinensisProtein Sequence Source: Phytozome v12: Msinensis_497_v7.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: MsinensisCyc Content StatisticsNumber of Pathways: 494Number of Reactions: 3206Number of Compounds: 2394Number of Enzymes: 17547Number of Citations: 3865
PoplarCyc 12.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Populus trichocarpa, other Populus species and hybridsProtein Sequence Source: Phytozome v12: Ptrichocarpa_444_v3.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: PoplarCyc Content StatisticsNumber of Pathways: 500Number of Reactions: 3190Number of Compounds: 2380Number of Enzymes: 13454Number of Citations: 3930
SugarbeetCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Beta vulgaris subsp. vulgarisProtein Sequence Source: The Beta vulgaris Resource: BeetSet-2.genes.1408.pep Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: SugarbeetCyc Content StatisticsNumber of Pathways: 496Number of Reactions: 3103Number of Compounds: 2309Number of Enzymes: 5718Number of Citations: 3937
Boleracea_CapitataCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Brassica oleracea var. capitataProtein Sequence Source: Phytozome v12: Boleraceacapitata_446_v1.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: Boleracea_CapitataCyc Content StatisticsNumber of Pathways: 467Number of Reactions: 2963Number of Compounds: 2178Number of Enzymes: 7598Number of Citations: 3648
GinkgoCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Ginkgo bilobaProtein Sequence Source: GIGA DB: Ginkgo_biloba.HiC.protein.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: GinkgoCyc Content StatisticsNumber of Pathways: 453Number of Reactions: 2958Number of Compounds: 2228Number of Enzymes: 7884Number of Citations: 3654
CgrandifloraCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Capsella grandifloraProtein Sequence Source: Phytozome v12: Cgrandiflora_266_v1.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CgrandifloraCyc Content StatisticsNumber of Pathways: 471Number of Reactions: 2983Number of Compounds: 2175Number of Enzymes: 6121Number of Citations: 3607
TeaCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Camellia sinensisProtein Sequence Source: Plant Kingdom DB: Teatree_Protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: TeaCyc Content StatisticsNumber of Pathways: 484Number of Reactions: 3069Number of Compounds: 2307Number of Enzymes: 8505Number of Citations: 3884
EsalsugineumCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Eutrema salsugineumProtein Sequence Source: Phytozome v12: Esalsugineum_173_v1.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: EsalsugineumCyc Content StatisticsNumber of Pathways: 477Number of Reactions: 3014Number of Compounds: 2196Number of Enzymes: 6877Number of Citations: 3642
MtruncatulaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Medicago truncatulaProtein Sequence Source: NCBI Genome: GCF_000219495.3_MedtrA17_4.0_protein.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: MtruncatulaCyc Content StatisticsNumber of Pathways: 524Number of Reactions: 3269Number of Compounds: 2460Number of Enzymes: 10909Number of Citations: 4081
PotatoCyc 6.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Solanum tuberosumProtein Sequence Source: Phytozome v12: Stuberosum_448_v4.03.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: PotatoCyc Content StatisticsNumber of Pathways: 521Number of Reactions: 3272Number of Compounds: 2497Number of Enzymes: 11429Number of Citations: 4209
SunflowerCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Helianthus annuusProtein Sequence Source: Phytozome v12: Hannuus_494_r1.2.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SunflowerCyc Content StatisticsNumber of Pathways: 497Number of Reactions: 3134Number of Compounds: 2330Number of Enzymes: 11386Number of Citations: 3879
Boleracea_OleraceaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Brassica oleracea var. oleraceaProtein Sequence Source: EnsemblPlants: Brassica_oleracea.BOL.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: Boleracea_OleraceaCyc Content StatisticsNumber of Pathways: 481Number of Reactions: 3136Number of Compounds: 2295Number of Enzymes: 12263Number of Citations: 3689
LerCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Arabidopsis thaliana LerProtein Sequence Source: NCBI: a_thaliana_thale_cress_protein.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: LerCyc Content StatisticsNumber of Pathways: 524Number of Reactions: 3253Number of Compounds: 2996Number of Enzymes: 7073Number of Citations: 8585
ChinesecabbageCyc 7.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Brassica rapa ssp. pekinensisProtein Sequence Source: EnsemblPlants v34: Brassica_rapa.IVFCAASv1.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: ChinesecabbageCyc Content StatisticsNumber of Pathways: 478Number of Reactions: 3027Number of Compounds: 2188Number of Enzymes: 9402Number of Citations: 3708
ValleyoakCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Quercus lobataProtein Sequence Source: Valley Oak Genome Project: Qlob_aa.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: ValleyoakCyc Content StatisticsNumber of Pathways: 516Number of Reactions: 3341Number of Compounds: 2514Number of Enzymes: 13100Number of Citations: 4051
FlaxCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Linum usitatissimumProtein Sequence Source: Phytozome v12: Lusitatissimum_200_v1.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: FlaxCyc Content StatisticsNumber of Pathways: 512Number of Reactions: 3230Number of Compounds: 2433Number of Enzymes: 10589Number of Citations: 4037
Ntabacum_Tn90Cyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Nicotiana tabacum TN90Protein Sequence Source: SGN: Nitab-v4.5_proteins_Edwards2017.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: Ntabacum_Tn90Cyc Content StatisticsNumber of Pathways: 547Number of Reactions: 3403Number of Compounds: 2603Number of Enzymes: 14176Number of Citations: 4351
PpersicaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Prunus persicaProtein Sequence Source: Phytozome v12: Ppersica_298_v2.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: PpersicaCyc Content StatisticsNumber of Pathways: 499Number of Reactions: 3053Number of Compounds: 2269Number of Enzymes: 10923Number of Citations: 3946
SviridisCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Setaria viridisProtein Sequence Source: Phytozome v12: Sviridis_500_v2.1.protein_primaryTranscriptOnly.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: SviridisCyc Content StatisticsNumber of Pathways: 485Number of Reactions: 3071Number of Compounds: 2275Number of Enzymes: 10539Number of Citations: 3827
BrachypodiumCyc 7.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Brachypodium distachyonProtein Sequence Source: Phytozome v12: Bdistachyon_314_v3.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: BrachypodiumCyc Content StatisticsNumber of Pathways: 479Number of Reactions: 3051Number of Compounds: 2278Number of Enzymes: 10065Number of Citations: 3823
LettuceCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Lactuca sativaProtein Sequence Source: Phytozome 12: Lsativa_467_v5.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: LettuceCyc Content StatisticsNumber of Pathways: 502Number of Reactions: 3161Number of Compounds: 2356Number of Enzymes: 14374Number of Citations: 3850
ChlamyCyc 9.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Chlamydomonas reinhardtiiProtein Sequence Source: Phytozome v12: Creinhardtii_281_v5.5.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference Link to PGDB: ChlamyCyc Content StatisticsNumber of Pathways: 380Number of Reactions: 2608Number of Compounds: 1879Number of Enzymes: 3367Number of Citations: 4095
WatermelonCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Citrullus lanatusProtein Sequence Source: CuGenDB: WCG_protein_v2.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: WatermelonCyc Content StatisticsNumber of Pathways: 474Number of Reactions: 2887Number of Compounds: 2150Number of Enzymes: 4916Number of Citations: 3829
Fvesca_VescaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Fragaria vesca subsp. VescaProtein Sequence Source: Phytozome v12: Fvesca_501_v2.0.a2.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: Fvesca_VescaCyc Content StatisticsNumber of Pathways: 494Number of Reactions: 3055Number of Compounds: 2257Number of Enzymes: 10213Number of Citations: 3926
ObrachyanthaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza brachyanthaProtein Sequence Source: EnsemblPlants v34: Oryza_brachyantha.Oryza_brachyantha.v1.4b.pep.all.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: ObrachyanthaCyc Content StatisticsNumber of Pathways: 489Number of Reactions: 3034Number of Compounds: 2282Number of Enzymes: 6227Number of Citations: 3908
QuinoaCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Chenopodium quinoaProtein Sequence Source: Phytozome v12: Cquinoa_392_v1.0.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: QuinoaCyc Content StatisticsNumber of Pathways: 496Number of Reactions: 3141Number of Compounds: 2359Number of Enzymes: 10629Number of Citations: 3933
SweetorangeCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Citrus sinensisProtein Sequence Source: Phytozome v12: Csinensis_154_v1.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: SweetorangeCyc Content StatisticsNumber of Pathways: 493Number of Reactions: 3144Number of Compounds: 2345Number of Enzymes: 11605Number of Citations: 3943
Brapa_FpscCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Brassica rapa FPscProtein Sequence Source: Phytozome v12: BrapaFPsc_277_v1.3.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: Brapa_FpscCyc Content StatisticsNumber of Pathways: 481Number of Reactions: 3047Number of Compounds: 2220Number of Enzymes: 9765Number of Citations: 3710
MbalbisianaCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Musa balbisianaProtein Sequence Source: Banana Genome Hub: PKW_pep.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: MbalbisianaCyc Content StatisticsNumber of Pathways: 475Number of Reactions: 2877Number of Compounds: 2139Number of Enzymes: 7049Number of Citations: 3812
ClementineCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Citrus clementinaProtein Sequence Source: Phytozome v12: Cclementina_182_v1.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: ClementineCyc Content StatisticsNumber of Pathways: 488Number of Reactions: 3042Number of Compounds: 2273Number of Enzymes: 8423Number of Citations: 3892
WildsugarcaneCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Saccharum spontanaeumProtein Sequence Source: The Ming Laboratory, University of Illinois: Sspon.v20190103.protein.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: WildsugarcaneCyc Content StatisticsNumber of Pathways: 500Number of Reactions: 3216Number of Compounds: 2424Number of Enzymes: 19681Number of Citations: 3934
GraimondiiCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Gossypium raimondiiProtein Sequence Source: Phytozome v12: Graimondii_221_v2.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: GraimondiiCyc Content StatisticsNumber of Pathways: 490Number of Reactions: 3141Number of Compounds: 2351Number of Enzymes: 18197Number of Citations: 3862
Oeuropaea_SylvestrisCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Olea europaea var. sylvestrisProtein Sequence Source: Phytozome v12: Oeuropaea_451_v1.0.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: Oeuropaea_SylvestrisCyc Content StatisticsNumber of Pathways: 485Number of Reactions: 3072Number of Compounds: 2307Number of Enzymes: 8643Number of Citations: 3869
RchinensisCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Rosa chinensisProtein Sequence Source: INRA: OBDH_1.0_sequences_prot.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: RchinensisCyc Content StatisticsNumber of Pathways: 509Number of Reactions: 3200Number of Compounds: 2413Number of Enzymes: 8938Number of Citations: 4027
SwitchgrassCyc 7.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Panicum virgatumProtein Sequence Source: Phytozome v12: Pvirgatum_516_v5.1.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SwitchgrassCyc Content StatisticsNumber of Pathways: 506Number of Reactions: 3240Number of Compounds: 2425Number of Enzymes: 25703Number of Citations: 3967
BreadwheatCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Triticum aestivumProtein Sequence Source: EnsemblPlants: Triticum_aestivum.IWGSC.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: BreadwheatCyc Content StatisticsNumber of Pathways: 496Number of Reactions: 3271Number of Compounds: 2474Number of Enzymes: 30682Number of Citations: 3975
MosobambooCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Phyllostachys edulisProtein Sequence Source: GIGA DB: Bamboo.Hic.pep.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: MosobambooCyc Content StatisticsNumber of Pathways: 484Number of Reactions: 3108Number of Compounds: 2340Number of Enzymes: 12574Number of Citations: 3845
CocoaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Theobroma cacaoProtein Sequence Source: Phytozome v12: Tcacao_523_v2.1.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CocoaCyc Content StatisticsNumber of Pathways: 498Number of Reactions: 3164Number of Compounds: 2381Number of Enzymes: 8866Number of Citations: 4012
StoraCyc 1.0 ParentOverviewReleased: PMN 14.5 (December 2020) Taxonomic Range: Senna toraProtein Sequence Source: NABIC: SETOT.complete.protein.20191226.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 24.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: StoraCyc Content StatisticsNumber of Pathways: 442Number of Reactions: 2702Number of Compounds: 2063Number of Enzymes: 6159Number of Citations: 1699
GrapeCyc 9.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Vitis viniferaProtein Sequence Source: EnsemblPlants: Vitis_vinifera.12X.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: GrapeCyc Content StatisticsNumber of Pathways: 500Number of Reactions: 3149Number of Compounds: 2391Number of Enzymes: 7448Number of Citations: 4035
OglaberrimaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza glaberrimaProtein Sequence Source: EnsemblPlants v34: Oryza_glaberrima.Oryza_glaberrima_V1.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OglaberrimaCyc Content StatisticsNumber of Pathways: 494Number of Reactions: 3042Number of Compounds: 2289Number of Enzymes: 6512Number of Citations: 3902
RedcloverCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Trifolium pratenseProtein Sequence Source: Phytozome v12: Tpratense_385_v2.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: RedcloverCyc Content StatisticsNumber of Pathways: 507Number of Reactions: 3209Number of Compounds: 2406Number of Enzymes: 8860Number of Citations: 3958
TomatoCyc 5.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Solanum lycopersicumProtein Sequence Source: SGN: ITAG3.2_proteins.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: TomatoCyc Content StatisticsNumber of Pathways: 540Number of Reactions: 3319Number of Compounds: 2516Number of Enzymes: 7991Number of Citations: 4411
BstrictaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Boechera strictaProtein Sequence Source: Phytozome v12: Bstricta_278_v1.2.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: BstrictaCyc Content StatisticsNumber of Pathways: 474Number of Reactions: 3016Number of Compounds: 2205Number of Enzymes: 6506Number of Citations: 3631
MuskmelonCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Cucumis meloProtein Sequence Source: Melonomics: CM4.0_protein.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: MuskmelonCyc Content StatisticsNumber of Pathways: 483Number of Reactions: 2979Number of Compounds: 2184Number of Enzymes: 5571Number of Citations: 3854
CommonbeanCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Phaseolus vulgarisProtein Sequence Source: Phytozome v12: Pvulgaris_442_v2.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CommonbeanCyc Content StatisticsNumber of Pathways: 501Number of Reactions: 3089Number of Compounds: 2284Number of Enzymes: 8708Number of Citations: 3949
HopCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Humulus lupulusProtein Sequence Source: HopBase: humulus_lupulus_repeat_filter_pep.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: HopCyc Content StatisticsNumber of Pathways: 497Number of Reactions: 3223Number of Compounds: 2429Number of Enzymes: 12073Number of Citations: 3963
OilseedrapeCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Brassica napusProtein Sequence Source: EnsemblPlants v34: Brassica_napus.AST_PRJEB5043_v1.pep.all.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OilseedrapeCyc Content StatisticsNumber of Pathways: 496Number of Reactions: 3240Number of Compounds: 2403Number of Enzymes: 21067Number of Citations: 3994
RedsageCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Salvia miltiorrhiza BungeProtein Sequence Source: TCM Genome and Transcriptome Database: salvia_cds_pep.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: RedsageCyc Content StatisticsNumber of Pathways: 495Number of Reactions: 3178Number of Compounds: 2398Number of Enzymes: 7361Number of Citations: 3872
TparvulaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Thellungiella parvulaProtein Sequence Source: Thellungiella.org: TpV84ORFs.protein‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: TparvulaCyc Content StatisticsNumber of Pathways: 475Number of Reactions: 3050Number of Compounds: 2229Number of Enzymes: 5908Number of Citations: 3655
CacuminataCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Camptotheca acuminataProtein Sequence Source: Medicinal Plant Genomics Resource: cac_hc_gene_models.repr.pep Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CacuminataCyc Content StatisticsNumber of Pathways: 489Number of Reactions: 3146Number of Compounds: 2355Number of Enzymes: 7360Number of Citations: 3881
ObarthiiCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza barthiiProtein Sequence Source: Ensembl: Oryza_barthii.O.barthii_v1.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: ObarthiiCyc Content StatisticsNumber of Pathways: 493Number of Reactions: 3097Number of Compounds: 2316Number of Enzymes: 7994Number of Citations: 3934
CornCyc 10.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Zea mays maysProtein Sequence Source: EnsemblPlants: Zea_mays.B73_RefGen_v4.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference Link to PGDB: CornCyc Content StatisticsNumber of Pathways: 556Number of Reactions: 3377Number of Compounds: 2592Number of Enzymes: 27682Number of Citations: 5245
KfedtschenkoiCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Kalanchoe fedtschenkoiProtein Sequence Source: Phytozome v12: Kfedtschenkoi_382_v1.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: KfedtschenkoiCyc Content StatisticsNumber of Pathways: 482Number of Reactions: 3061Number of Compounds: 2294Number of Enzymes: 10385Number of Citations: 3814
OlucimarinusCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Ostreococcus lucimarinusProtein Sequence Source: Phytozome v12: Olucimarinus_231_v2.0.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OlucimarinusCyc Content StatisticsNumber of Pathways: 294Number of Reactions: 1953Number of Compounds: 1425Number of Enzymes: 1701Number of Citations: 2727
RmultifloraCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Rosa multifloraProtein Sequence Source: Kazusa Genome Database: RMU_r2.0.pep Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: RmultifloraCyc Content StatisticsNumber of Pathways: 512Number of Reactions: 3279Number of Compounds: 2483Number of Enzymes: 13358Number of Citations: 4011
AcoeruleaCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Aquilegia coeruleaProtein Sequence Source: Phytozome v12: Acoerulea_322_v3.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: AcoeruleaCyc Content StatisticsNumber of Pathways: 493Number of Reactions: 3120Number of Compounds: 2328Number of Enzymes: 9985Number of Citations: 3924
VcarteriCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Volvox carteriProtein Sequence Source: Phytozome v12: Vcarteri_317_v2.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: VcarteriCyc Content StatisticsNumber of Pathways: 321Number of Reactions: 2272Number of Compounds: 1635Number of Enzymes: 2804Number of Citations: 2769
CannuumCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Capsicum annuumProtein Sequence Source: SGN: Pepper.v.1.55.PEP.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CannuumCyc Content StatisticsNumber of Pathways: 512Number of Reactions: 3147Number of Compounds: 2420Number of Enzymes: 8164Number of Citations: 4136
OilpalmCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Elaeis guineensisProtein Sequence Source: Plaza 4.0: proteome.all_transcripts.egu.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OilpalmCyc Content StatisticsNumber of Pathways: 459Number of Reactions: 2906Number of Compounds: 2181Number of Enzymes: 9243Number of Citations: 3769
CroseusCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Catharanthus roseusProtein Sequence Source: Medicinal Plant Genomics Resource: cro_v2.proteins.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CroseusCyc Content StatisticsNumber of Pathways: 500Number of Reactions: 3069Number of Compounds: 2301Number of Enzymes: 5483Number of Citations: 4004
KlaxifloraCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Kalanchoe laxifloraProtein Sequence Source: Phytozome v12: Klaxiflora_309_v1.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: KlaxifloraCyc Content StatisticsNumber of Pathways: 472Number of Reactions: 3023Number of Compounds: 2260Number of Enzymes: 16279Number of Citations: 3790
OpunctataCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza punctataProtein Sequence Source: EnsemblPlants v34: Oryza_punctata.Oryza_punctata_v1.2.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OpunctataCyc Content StatisticsNumber of Pathways: 484Number of Reactions: 3022Number of Compounds: 2273Number of Enzymes: 8371Number of Citations: 3888
SelaginellaCyc 8.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Selaginella moellendorffiiProtein Sequence Source: Phytozome v12: Smoellendorffii_91_v1.0.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SelaginellaCyc Content StatisticsNumber of Pathways: 422Number of Reactions: 2799Number of Compounds: 2087Number of Enzymes: 6216Number of Citations: 3417
AhalleriCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Arabidopsis halleriProtein Sequence Source: Phytozome v11 (early): Ahalleri_264_v1.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: AhalleriCyc Content StatisticsNumber of Pathways: 470Number of Reactions: 3062Number of Compounds: 2231Number of Enzymes: 6163Number of Citations: 3600
WheataCyc 5.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Triticum urartuProtein Sequence Source: EnsemblPlants v34: Triticum_urartu.ASM34745v1.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: WheataCyc Content StatisticsNumber of Pathways: 484Number of Reactions: 3121Number of Compounds: 2328Number of Enzymes: 7186Number of Citations: 3864
Carietinum_Icc4958Cyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Cicer arietinum ICC4958Protein Sequence Source: CSFL: Ca_Pep_v2.fasta.txt Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: Carietinum_Icc4958Cyc Content StatisticsNumber of Pathways: 493Number of Reactions: 3236Number of Compounds: 2365Number of Enzymes: 6633Number of Citations: 3912
OlongistaminataCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza longistaminataProtein Sequence Source: Ensembl: Oryza_longistaminata.O_longistaminata_v1.0.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OlongistaminataCyc Content StatisticsNumber of Pathways: 498Number of Reactions: 3089Number of Compounds: 2329Number of Enzymes: 7031Number of Citations: 3938
CrubellaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Capsella rubellaProtein Sequence Source: Phytozome v12: Crubella_474_v1.1.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CrubellaCyc Content StatisticsNumber of Pathways: 472Number of Reactions: 3015Number of Compounds: 2205Number of Enzymes: 6609Number of Citations: 3628
LjaponicusCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Lotus japonicusProtein Sequence Source: Kazusa Genome Database: Lj3.0_pep.fna Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: LjaponicusCyc Content StatisticsNumber of Pathways: 506Number of Reactions: 3234Number of Compounds: 2426Number of Enzymes: 9975Number of Citations: 4022
OrufipogonCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza rufipogonProtein Sequence Source: EnsemblPlants v34: Oryza_rufipogon.OR_W1943.pep.all.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OrufipogonCyc Content StatisticsNumber of Pathways: 496Number of Reactions: 3118Number of Compounds: 2332Number of Enzymes: 8833Number of Citations: 3942
SetariaCyc 7.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Setaria italicaProtein Sequence Source: Phytozome v11: Sitalica_312_v2.2.protein_primaryTranscriptOnly.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SetariaCyc Content StatisticsNumber of Pathways: 489Number of Reactions: 3052Number of Compounds: 2270Number of Enzymes: 9156Number of Citations: 3857
AhypochondriacusCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Amaranthus hypochondriacusProtein Sequence Source: Phytozome v12: Ahypochondriacus_459_v2.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: AhypochondriacusCyc Content StatisticsNumber of Pathways: 485Number of Reactions: 2984Number of Compounds: 2217Number of Enzymes: 5496Number of Citations: 3888
WheatdCyc 5.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Aegilops tauschiiProtein Sequence Source: EnsemblPlants v34: Aegilops_tauschii.ASM34733v1.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: WheatdCyc Content StatisticsNumber of Pathways: 520Number of Reactions: 3611Number of Compounds: 2704Number of Enzymes: 57062Number of Citations: 4034
CarnationCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Dianthus caryophyllusProtein Sequence Source: Kazusa Genome Database: DCA_r1.0_pep.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CarnationCyc Content StatisticsNumber of Pathways: 490Number of Reactions: 3106Number of Compounds: 2341Number of Enzymes: 7514Number of Citations: 3958
OmeridionalisCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza meridionalisProtein Sequence Source: Ensembl: Oryza_meridionalis.Oryza_meridionalis_v1.3.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OmeridionalisCyc Content StatisticsNumber of Pathways: 475Number of Reactions: 2966Number of Compounds: 2277Number of Enzymes: 8608Number of Citations: 3903
Csativa_PkCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Cannabis sativa Purple KushProtein Sequence Source: Cannabis genome project (http://genome.ccbr.utoronto.ca): canSat3_transcriptome-representative_ORFs.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: Csativa_PkCyc Content StatisticsNumber of Pathways: 493Number of Reactions: 3142Number of Compounds: 2328Number of Enzymes: 5872Number of Citations: 3908
LperrieriCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Leersia perrieriProtein Sequence Source: EnsemblPlants v34: Leersia_perrieri.Lperr_V1.4.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: LperrieriCyc Content StatisticsNumber of Pathways: 488Number of Reactions: 3018Number of Compounds: 2260Number of Enzymes: 8210Number of Citations: 3883
McommodaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Micromonas commoda RCC299Protein Sequence Source: Phytozome v12: MspRCC299_229_v3.0.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: McommodaCyc Content StatisticsNumber of Pathways: 310Number of Reactions: 2171Number of Compounds: 1564Number of Enzymes: 2044Number of Citations: 2778
OryzaCyc 7.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza sativa japonica groupProtein Sequence Source: EnsemblPlants: Oryza_sativa.IRGSP-1.0.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: OryzaCyc Content StatisticsNumber of Pathways: 606Number of Reactions: 3846Number of Compounds: 2987Number of Enzymes: 14682Number of Citations: 5193
SfallaxCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Sphagnum fallaxProtein Sequence Source: Phytozome v12: Sfallax_310_v0.5.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SfallaxCyc Content StatisticsNumber of Pathways: 403Number of Reactions: 2655Number of Compounds: 1955Number of Enzymes: 6745Number of Citations: 3262
AlyrataCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Arabidopsis lyrataProtein Sequence Source: Phytozome v12: Alyrata_384_v2.1.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: AlyrataCyc Content StatisticsNumber of Pathways: 484Number of Reactions: 3057Number of Compounds: 2232Number of Enzymes: 7122Number of Citations: 3706
ZmarinaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Zostera marinaProtein Sequence Source: Phytozome v12: Zmarina_324_v2.2.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: ZmarinaCyc Content StatisticsNumber of Pathways: 436Number of Reactions: 2672Number of Compounds: 1967Number of Enzymes: 4638Number of Citations: 3468
CarrotCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Daucus carota subsp. SativusProtein Sequence Source: Phytozome v12: Dcarota_388_v2.0.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CarrotCyc Content StatisticsNumber of Pathways: 486Number of Reactions: 3033Number of Compounds: 2253Number of Enzymes: 7185Number of Citations: 3883
OnivaraCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oryza nivaraProtein Sequence Source: Ensembl: Oryza_nivara.Oryza_nivara_v1.0.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OnivaraCyc Content StatisticsNumber of Pathways: 495Number of Reactions: 3076Number of Compounds: 2295Number of Enzymes: 9055Number of Citations: 3928
CsubellipsoideaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Coccomyxa subellipsoidea C-169Protein Sequence Source: Phytozome v12: CsubellipsoideaC_169_227_v2.0.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CsubellipsoideaCyc Content StatisticsNumber of Pathways: 312Number of Reactions: 2256Number of Compounds: 1648Number of Enzymes: 2266Number of Citations: 2889
MdomesticaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Malus domesticaProtein Sequence Source: The Apple Genome and Epigenome: GDDH13_1-1_prot.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: MdomesticaCyc Content StatisticsNumber of Pathways: 508Number of Reactions: 3179Number of Compounds: 2393Number of Enzymes: 10558Number of Citations: 4049
OthomaeumCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Oropetium thomaeumProtein Sequence Source: Phytozome v12: Othomaeum_386_v1.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: OthomaeumCyc Content StatisticsNumber of Pathways: 460Number of Reactions: 2868Number of Compounds: 2135Number of Enzymes: 5389Number of Citations: 3756
SoleraceaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Spinacia oleraceaProtein Sequence Source: The Beta vulgaris Resource: SpiSet-1.genes.1408.pep‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: SoleraceaCyc Content StatisticsNumber of Pathways: 490Number of Reactions: 3016Number of Compounds: 2229Number of Enzymes: 5237Number of Citations: 4013
AmborellaCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Amborella trichopodaProtein Sequence Source: Phytozome v12: Atrichopoda_291_v1.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: AmborellaCyc Content StatisticsNumber of Pathways: 472Number of Reactions: 3074Number of Compounds: 2292Number of Enzymes: 5324Number of Citations: 3816
CcampestrisCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Cuscuta campestrisProtein Sequence Source: Cuscuta campestris Genome Project: data_cucam_0.32.annot.protein.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CcampestrisCyc Content StatisticsNumber of Pathways: 470Number of Reactions: 2901Number of Compounds: 2156Number of Enzymes: 9592Number of Citations: 3653
CashewCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Anacardium occidentaleProtein Sequence Source: Phytozome v12: Aoccidentale_449_v0.9.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CashewCyc Content StatisticsNumber of Pathways: 496Number of Reactions: 3150Number of Compounds: 2357Number of Enzymes: 18887Number of Citations: 3957
PigeonpeaCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Cajanus CajanProtein Sequence Source: Legume Information System: cajca.ICPL87119.gnm1.ann1.Y27M.protein_main.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: PigeonpeaCyc Content StatisticsNumber of Pathways: 498Number of Reactions: 3157Number of Compounds: 2346Number of Enzymes: 7345Number of Citations: 3911
CucumberCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Cucumis sativusProtein Sequence Source: Phytozome v12: Csativus_122_v1.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CucumberCyc Content StatisticsNumber of Pathways: 481Number of Reactions: 2917Number of Compounds: 2155Number of Enzymes: 7317Number of Citations: 3875
MguttatusCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Mimulus guttatusProtein Sequence Source: Phytozome v12: Mguttatus_256_v2.0.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: MguttatusCyc Content StatisticsNumber of Pathways: 487Number of Reactions: 3074Number of Compounds: 2340Number of Enzymes: 7771Number of Citations: 3839
PapayaCyc 8.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Carica papayaProtein Sequence Source: Phytozome v12: Cpapaya_113_ASGPBv0.4.protein.fa‚Äã Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: PapayaCyc Content StatisticsNumber of Pathways: 485Number of Reactions: 3114Number of Compounds: 2314Number of Enzymes: 5201Number of Citations: 3806
SorghumbicolorCyc 7.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Sorghum bicolorProtein Sequence Source: Phytozome v12: Sbicolor_454_v3.1.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SorghumbicolorCyc Content StatisticsNumber of Pathways: 492Number of Reactions: 3063Number of Compounds: 2298Number of Enzymes: 9924Number of Citations: 3868
AraCyc 17.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Arabidopsis thaliana colProtein Sequence Source: AraPort v11: Araport11_genes.201606.pep.repr.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Substantial manual curation of enzymes In addition, large-scale computational predictions of enzyme function not subject to curator review Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: AraCyc Content StatisticsNumber of Pathways: 650Number of Reactions: 3793Number of Compounds: 3030Number of Enzymes: 8556Number of Citations: 7221
CorkoakCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Quercus suberProtein Sequence Source: NCBI: GCF_002906115.1_CorkOak1.0_protein.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CorkoakCyc Content StatisticsNumber of Pathways: 522Number of Reactions: 3978Number of Compounds: 3001Number of Enzymes: 14428Number of Citations: 4077
CassavaCyc 9.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Manihot esculenta esculentaProtein Sequence Source: Phytozome v12: Mesculenta_511_v7.0.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CassavaCyc Content StatisticsNumber of Pathways: 492Number of Reactions: 3111Number of Compounds: 2322Number of Enzymes: 8603Number of Citations: 3864
RubbertreeCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Hevea brasiliensisProtein Sequence Source: Rubber Genome & Transcriptome Database: hevea_amino.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: RubbertreeCyc Content StatisticsNumber of Pathways: 516Number of Reactions: 3334Number of Compounds: 2528Number of Enzymes: 9809Number of Citations: 4036
CzofingiensisCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Chromochloris zofingiensisProtein Sequence Source: Phytozome v12: Czofingiensis_461_v5.2.3.2.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: CzofingiensisCyc Content StatisticsNumber of Pathways: 332Number of Reactions: 2567Number of Compounds: 1927Number of Enzymes: 2971Number of Citations: 2900
MossCyc 8.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Physcomitrella patensProtein Sequence Source: Phytozome v12: Ppatens_318_v3.3.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: MossCyc Content StatisticsNumber of Pathways: 415Number of Reactions: 2868Number of Compounds: 2046Number of Enzymes: 17888Number of Citations: 3330
PaxillarisCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Petunia axillarisProtein Sequence Source: SGN: Petunia_axillaris_v1.6.2_proteins.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: PaxillarisCyc Content StatisticsNumber of Pathways: 505Number of Reactions: 3217Number of Compounds: 2425Number of Enzymes: 8094Number of Citations: 3946
SoyCyc 10.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Glycine maxProtein Sequence Source: Phytozome v12: Gmax_508_Wm82.a4.v1.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: SoyCyc Content StatisticsNumber of Pathways: 589Number of Reactions: 3472Number of Compounds: 2695Number of Enzymes: 19055Number of Citations: 5295
AsparagusCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Asparagus officinalisProtein Sequence Source: Phytozome v12: Aofficinalis_498_V1.1.protein_primaryTranscriptOnly.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: AsparagusCyc Content StatisticsNumber of Pathways: 462Number of Reactions: 2974Number of Compounds: 2247Number of Enzymes: 5914Number of Citations: 3757
CvariabilisCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Chlorella variabilis NC64AProtein Sequence Source: JGI: Chlorella_NC64A.fix_proteins.fasta Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CvariabilisCyc Content StatisticsNumber of Pathways: 334Number of Reactions: 2441Number of Compounds: 1757Number of Enzymes: 17511Number of Citations: 2918
CastorbeanCyc 3.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Ricinus communisProtein Sequence Source: Phytozome v12: Rcommunis_119_v0.1.protein.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: CastorbeanCyc Content StatisticsNumber of Pathways: 521Number of Reactions: 3756Number of Compounds: 2840Number of Enzymes: 6895Number of Citations: 4047
SacredlotusCyc 1.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Nelumbo nuciferaProtein Sequence Source: NCBI: GCF_000365185.1_Chinese_Lotus_1.1_protein.faa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: SacredlotusCyc Content StatisticsNumber of Pathways: 471Number of Reactions: 2961Number of Compounds: 2219Number of Enzymes: 8966Number of Citations: 3756
DrotundataCyc 2.0 ParentOverviewReleased: PMN 14.0 (January 2020) Taxonomic Range: Dioscorea rotundataProtein Sequence Source: EnsemblPlants v38: Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.pep.all.fa Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Almost exclusively large-scale computational predictions of enzyme function not subject to curator review Small number of manually curated enzymes Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Primarily computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on experimental evidence or curator inference Link to PGDB: DrotundataCyc Content StatisticsNumber of Pathways: 450Number of Reactions: 2816Number of Compounds: 2125Number of Enzymes: 4721Number of Citations: 3616
PlantCyc 15.0 ParentOverviewReleased: PMN 15.0 (January 2021) Taxonomic Range: primarily ViridiplantaeProtein Sequence Source: Varies according to source: All enzymes have been imported from PMN databases or MetaCyc. Enzyme Functional Annotation Method: E2P2v4.0 Enzyme Evidence: Substantial manual curation of enzymes In addition, large-scale computational predictions of enzyme function not subject to curator review Pathway Prediction Program: Pathway Tools 23.0SAVI pathway validation lists: MCP 2.0AIPP 6.0CAPP 6.0CVP 6.0NPP 9.0UPP 9.0 Pathway Evidence: Substantial manual curation of pathways Some computational prediction of pathways followed by SAVI refinement and curator review Additional pathways imported from MetaCyc based on curator inference Link to PGDB: PlantCyc Content StatisticsNumber of Pathways: 1163Number of Reactions: 5234Number of Compounds: 4807Number of Enzymes: 3769Number of Citations: 14783