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PMN Data
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PMN Tools
BLAST
Run a gene or protein of interest through the PMN BLAST Server to find homologous proteins in species databases hosted at PMN
Metabolic Cluster Viewer
Find and view plant metabolic clusters that have been found using the PlantClusterFinder software
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Data Sets
Download the complete databases OR; lists of pathways, compounds, protein sequences, and SAVI files separately. A link to download PathwayTools software is also provided.
Software
Download our enzyme prediction software E2P2, pathway validation software SAVI, and gene cluster prediction software PlantClusterFinder. Download links for the PathwayTools API software PerlCyc and JavaCyc are provided.
Pathway Tools Biocyc Bundle
Download all pathway databases and PathwayTools software
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Omics Viewer Sample Data Files
Instructions on how to visualize experimental data in a global metabolic pathway context by using Cellular Omics Viewer. Two example files of experimental data are provided
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Useful Sites
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Google PMN
- Databases
PlantCyc
AcoeruleaCyc
AhalleriCyc
AhypochondriacusCyc
AlyrataCyc
AmborellaCyc
AraCyc
AsparagusCyc
BananaCyc
Boleracea_CapitataCyc
Boleracea_OleraceaCyc
BrachypodiumCyc
Brapa_FpscCyc
BreadwheatCyc
BstrictaCyc
CacuminataCyc
CannuumCyc
Carietinum_Icc4958Cyc
CarnationCyc
CarrotCyc
CashewCyc
CassavaCyc
CastorbeanCyc
CcampestrisCyc
CcapsularisCyc
CgiganteaCyc
CgrandifloraCyc
ChinesecabbageCyc
ChlamyCyc
ClementineCyc
CocoaCyc
CommonbeanCyc
CorkoakCyc
CornCyc
CroseusCyc
CrubellaCyc
Csativa_PkCyc
CsubellipsoideaCyc
CucumberCyc
CvariabilisCyc
CzofingiensisCyc
DatepalmCyc
DrotundataCyc
EggplantCyc
EgrandisCyc
EsalsugineumCyc
EuropeanpearCyc
FlaxCyc
Fvesca_VescaCyc
GinkgoCyc
GraimondiiCyc
GrapeCyc
HopCyc
KfedtschenkoiCyc
KlaxifloraCyc
LerCyc
LettuceCyc
LjaponicusCyc
LperrieriCyc
MbalbisianaCyc
McommodaCyc
MdomesticaCyc
MguttatusCyc
MosobambooCyc
MossCyc
MpolymorphaCyc
MpusillaCyc
MsinensisCyc
MtruncatulaCyc
MuskmelonCyc
Ntabacum_Tn90Cyc
ObarthiiCyc
ObrachyanthaCyc
Oeuropaea_SylvestrisCyc
OglaberrimaCyc
OilpalmCyc
OilseedrapeCyc
OlongistaminataCyc
OlucimarinusCyc
OmeridionalisCyc
OnivaraCyc
OpunctataCyc
OrufipogonCyc
OryzaCyc
OthomaeumCyc
PapayaCyc
PaxillarisCyc
PhalliiCyc
PigeonpeaCyc
PineappleCyc
PoplarCyc
PotatoCyc
PpersicaCyc
QuinoaCyc
RchinensisCyc
RedcloverCyc
RedsageCyc
RmultifloraCyc
RubbertreeCyc
SacredlotusCyc
SelaginellaCyc
SetariaCyc
SfallaxCyc
SoleraceaCyc
SorghumbicolorCyc
SoyCyc
SpennelliiCyc
SpiderflowerCyc
SpirodelaCyc
StoraCyc
SugarbeetCyc
SunflowerCyc
SviridisCyc
SweetcherryCyc
SweetorangeCyc
SwitchgrassCyc
TeaCyc
TomatoCyc
TparvulaCyc
ValleyoakCyc
VcarteriCyc
WatermelonCyc
WheataCyc
WheatdCyc
WildsugarcaneCyc
ZmarinaCyc
PlantCyc
AraCyc
ChlamyCyc
CornCyc
SoyCyc
OryzaCyc
GarlicCyc
Aagrestis_BonnCyc
Aagrestis_oxfordCyc
ApunctatusCyc
AangustusCyc
SweetWormwoodCyc
JackfruitCyc
BreadfruitCyc
AfilliculoidesCyc
CamelinaCyc
DrabaCyc
TeffCyc
AppleRingAcaciaCyc
StrawberryCyc
GamNuiCyc
AlyssumCyc
MoringaCyc
PocketWaterLilyCyc
MexicanAvocadoCyc
HaasAvocadoCyc
HuskTomatoCyc
BlackPepperCyc
RosemaryCyc
WatermossCyc
RyeCyc
CoastRedwoodCyc
VanillaCyc
BambaraBeanCyc
StoraCyc
MtruncatulaCyc
ChinesecabbageCyc
AhalleriCyc
BarleyCyc
BrachypodiumCyc
CacuminataCyc
CassavaCyc
DrotundataCyc
EuropeanpearCyc
Fvesca_vescaCyc
GrapeCyc
LjaponicusCyc
OilpalmCyc
PhalliiCyc
PoplarCyc
PotatoCyc
RchinensisCyc
SfallaxCyc
TeaCyc
TomatoCyc
ValleyoakCyc
WheataCyc
ZmarinaCyc
MbalbisianaCyc
Csativa_pkCyc
Carietinum_icc4958Cyc
WatermelonCyc
ObarthiiCyc
OlongistaminataCyc
OmeridionalisCyc
OnivaraCyc
WheatDCyc
OilseedrapeCyc
Boleracea_oleraceaCyc
CcapsularisCyc
LperrieriCyc
ObrachyanthaCyc
OglaberrimaCyc
OpunctataCyc
OrufipogonCyc
MosobambooCyc
GinkgoCyc
RedsageCyc
HopCyc
CvariabilisCyc
SweetcherryCyc
CarnationCyc
RmultifloraCyc
EggplantCyc
PigeonpeaCyc
CgiganteaCyc
CroseusCyc
MuskmelonCyc
LerCyc
SacredlotusCyc
SpiderflowerCyc
CorkoakCyc
AcoeruleaCyc
PineappleCyc
AhypochondriacusCyc
AlyrataCyc
CashewCyc
AsparagusCyc
AmborellaCyc
Boleracea_capitataCyc
Brapa_fpscCyc
BstrictaCyc
ClementineCyc
CgrandifloraCyc
PapayaCyc
QuinoaCyc
CrubellaCyc
CucumberCyc
SweetorangeCyc
CsubellipsoideaCyc
CzofingiensisCyc
CarrotCyc
EgrandisCyc
EsalsugineumCyc
MdomesticaCyc
GraimondiiCyc
SunflowerCyc
KfedtschenkoiCyc
KlaxifloraCyc
LettuceCyc
FlaxCyc
MguttatusCyc
MpolymorphaCyc
MpusillaCyc
MsinensisCyc
McommodaCyc
BananaCyc
Oeuropaea_sylvestrisCyc
OlucimarinusCyc
OthomaeumCyc
MossCyc
PpersicaCyc
SwitchgrassCyc
CommonbeanCyc
CastorbeanCyc
SorghumbicolorCyc
SetariaCyc
SelaginellaCyc
SpirodelaCyc
SviridisCyc
CocoaCyc
RedcloverCyc
BreadwheatCyc
VcarteriCyc
CcampestrisCyc
RubbertreeCyc
Ntabacum_tn90Cyc
CannuumCyc
PaxillarisCyc
SpennelliiCyc
SugarbeetCyc
SoleraceaCyc
WildsugarcaneCyc
TparvulaCyc
DatepalmCyc
TidestromiaCyc
Home
Help
Useful Sites
Useful Sites
External "Cyc" Databases
MetaCyc (multi-organism)
BioCyc (multi-organism)
CapCyc (Pepper)
CoffeaCyc (Coffee)
LycoCyc (Tomato)
MedicCyc (Medicago)
PetuniaCyc
TobaccoCyc
TAIR
NCBI
Metabolomics Resources
Model Organism Databases
Proteomics Resources
Taxonomic Resources
PlantMetabolomics Project
Conferences
Job Sites