MosobambooCyc 2.0.0

Parent

Overview

Released:

PMN 16 (July 2024)

Taxonomic Range:

Phyllostachys edulis

Protein Sequence Source:

GIGA DB: Bamboo.Hic.pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

520

Number of Reactions:

3338

Number of Compounds:

2724

Number of Enzymes:

12479

Number of Citations:

4521