Databases Overview

AhalleriCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AhypochondriacusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AlyrataCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AmborellaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 15.0

Parent

Overview

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 
Enzyme Functional Annotation Method: 

Primarily E2P2 v3.1

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BananaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BarleyCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Boleracea_capitataCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Boleracea_oleraceaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BrachypodiumCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Brapa_fpscCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BreadwheatCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BstrictaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Carietinum_icc4958Cyc 1.0

Parent

Overview
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CarrotCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CassavaCyc 7.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CastorbeanCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CgrandifloraCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

ChineseCabbageCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

ChlamyCyc 7.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ClementineCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CocoaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CommonbeanCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CornCyc 8.0

Parent

Overview
Released: 
Protein Sequence Source: 

EnsemblPlants v34: Zea_mays.AGPv4.pep.all.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CroseusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CrubellaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Csativa_pkCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CsubellipsoideaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CucumberCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

EgrandisCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

EsalsugineumCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

FlaxCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Fvesca_vescaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

GraimondiiCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

GrapeCyc 7.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

KlaxifloraCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

LjaponicusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

LperrieriCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

McommodaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

MdomesticaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

MguttatusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

MossCyc 6.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

MpusillaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

MtruncatulaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Ntabacum_tn90Cyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

ObrachyanthaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

OglaberrimaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

OilseedrapeCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

OlucimarinusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

OpunctataCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

OrufipogonCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

OryzaCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

OthomaeumCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

PapayaCyc 6.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

PineappleCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 12.0

Parent

Overview

PlantCyc is a metabolic pathway reference database containing more than 1000 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases or MetaCyc
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on curator inference

PoplarCyc 10.0

Parent

Overview

More information on PoplarCyc curation is available.

Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

PotatoCyc 4.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

PpersicaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

RedcloverCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

RedsageCyc 1.0

Parent

Overview
Protein Sequence Source: 

Herbal Medicine Omics Database (http://www.herbal-genome.cn/): danshen.pep​

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

SelaginellaCyc 6.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

SetariaCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

SoleraceaCyc 1.0

Parent

Overview
Protein Sequence Source: 

The Beta vulgaris Resource: SpiSet-1.genes.1408.pep​

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

SorghumBicolorCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

SoyCyc 8.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

SpirodelaCyc 3.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

SugarbeetCyc 1.0

Parent

Overview
Protein Sequence Source: 

The Beta vulgaris Resource: BeetSet-2.genes.1408.pep

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

SviridisCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

SweetorangeCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

SwitchgrassCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

TomatoCyc 3.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

TparvulaCyc 1.0

Parent

Overview
Protein Sequence Source: 

Thellungiella.org: TpV84ORFs.protein​

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

VcarteriCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

WheatACyc 3.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

WheatDCyc 3.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

ZmarinaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 11.0

Parent

Overview
Released: 

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases or MetaCyc
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 10.0

Parent

Overview
Released: 

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases or MetaCyc
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 9.5

Parent

Overview
Released: 

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases or MetaCyc
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 9.0

Parent

Overview
Released: 

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 8.0

Parent

Overview

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases or MetaCyc
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 7.0

Parent

Overview

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 300 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases or MetaCyc
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 6.0

Parent

Overview
Released: 

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 300 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.
Protein Sequence Source: 

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Functional Annotation Method: 

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
All pathways have been manually imported from PMN databases or MetaCyc
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

PlantCyc 5.0

Parent

Overview
Released: 

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 300 plant species (See Database Statistics).

  • The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
  • Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
  • For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

AhalleriCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AhypochondriacusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AlyrataCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AmborellaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 15.0

Parent

Overview

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 
Enzyme Functional Annotation Method: 

Primarily E2P2 v3.1

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 14.0

Parent

Overview
Released: 

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 

Phytozome v10 (nuclear): Athaliana_167_peptide.fa and TAIR (organellar): various genome releases including TAIR10_pep_20110103_representative_gene_model

Enzyme Functional Annotation Method: 

Primarily E2P2 v3.0

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
Pathway Tools v18.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 13.0

Parent

Overview
Released: 

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 

Phytozome v10 (nuclear): Athaliana_167_peptide.fa and TAIR (organellar): various genome releases including TAIR10_pep_20110103_representative_gene_model

Enzyme Functional Annotation Method: 

Primarily E2P2 v3.0

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
Pathway Tools v18.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 12.0

Parent

Overview
Released: 

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 

Phytozome 9.0 (nuclear): Athaliana_167_peptide.fa and TAIR (organellar): various genome releases includingTAIR10_pep_20110103_representative_gene_model

Enzyme Functional Annotation Method: 

Primarily E2P2 v2.1

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
Pathway Tools v.17.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 11.5

Parent

Overview

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

** Please note: The initial PMN 8.0 release in June 2013 included AraCyc 11.0. Proteins not associated to reactions were removed from AraCyc 11.0 to produce this updated version (AraCyc 11.5).

More information on AraCyc curation is available.

Protein Sequence Source: 

 Phytozome 9.0 (nuclear): Athaliana_167_peptide.fa and TAIR (organellar): various genome releases includingTAIR10_pep_20110103_representative_gene_model

Enzyme Functional Annotation Method: 

Primarily E2P2 2.0

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
Pathway Tools v.16.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 11.0

Parent

Overview
Released: 

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 

Phytozome 9.0 (nuclear): Athaliana_167_peptide.fa and TAIR (organellar): various genome releases including TAIR10_pep_20110103_representative_gene_model

Enzyme Functional Annotation Method: 

Primarily E2P2 2.0

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
Pathway Tools v.16.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 10.0

Parent

Overview
Released: 

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 

TAIR: various genome releases including TAIR10_pep_20110103_representative_gene_model

Enzyme Functional Annotation Method: 

Various methods over time including E2P2 1.0 and process described in Zhang 2010

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
several versions of Pathway Tools
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 9.0

Parent

Overview
Released: 

AraCyc is the most highly curated species-specific database present at the PMN. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways.

More information on AraCyc curation is available.

Protein Sequence Source: 

TAIR: various genome releases includingTAIR10_pep_20110103_representative_gene_model

Enzyme Functional Annotation Method: 

Various methods over time including E2P2 1.0 and process described in Zhang 2010

Enzyme Evidence: 
  • Substantial manual curation of enzymes
  • In addition, large-scale computational predictions of enzyme function not subject to curator review
Pathway Prediction Program: 
several versions of Pathway Tools
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

AraCyc 8.0

Parent

Overview
Released: 

AraCyc, a single species database maintained in collaboration with TAIR (The Arabidopsis Information Resource), houses a large set of curated metabolic pathways.

  • The majority of the pathways found in AraCyc have some measure of experimental support, but additional computationally-predicted pathways are included to maximize the hypothesis-generating power of the database. These pathways are known to exist in other species or in non-plant organisms, but have not been reported in Arabidopsis. However, some hints indicate that Arabidopsis may utilize the same pathway or similar routes. All predicted pathways are manually reviewed by curators who add comments concerning their potential validity.
  • As in PlantCyc, enzymes present in AraCyc may have experimental support or may be based solely on computational predictions. And, an identical set of evidence codes is used to clearly identify the source of the information.
  • The structures for the genes included in AraCyc are based on TAIR genome annotations. Additional Gene Ontology and Plant Ontology functional annotations derived from experimental data and computational predictions may be listed at the TAIR gene pages. These are categorized using a different set of evidence codes.

BananaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BarleyCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BarleyCyc 4.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BarleyCyc 3.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BarleyCyc 2.0

Parent

Overview
Released: 
Protein Sequence Source: 

Helmholtz Zentrum Munchen - Munich Information Center for Protein Sequences (MIPS): barley_HighConf_genes_MIPS_23Mar12_ProteinSeq.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 17.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BarleyCyc 1.0

Parent

Overview
Protein Sequence Source: 

Helmholtz Zentrum Munchen - Munich Information Center for Protein Sequences (MIPS): barley_HighConf_genes_MIPS_23Mar12_ProteinSeq.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Boleracea_capitataCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Boleracea_oleraceaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BrachypodiumCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BrachypodiumCyc 4.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BrachypodiumCyc 3.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BrachypodiumCyc 2.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 17.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

BrachypodiumCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Brapa_fpscCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BreadwheatCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

BstrictaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Carietinum_icc4958Cyc 1.0

Parent

Overview
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CarrotCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CassavaCyc 7.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CassavaCyc 6.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CassavaCyc 5.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CassavaCyc 4.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 17.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CassavaCyc 3.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CassavaCyc 2.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 15.0
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CassavaCyc 1.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 15.0
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CastorbeanCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CgrandifloraCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

ChineseCabbageCyc 5.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

ChineseCabbageCyc 4.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

ChineseCabbageCyc 3.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

ChineseCabbageCyc 2.0

Parent

Overview
Released: 
Protein Sequence Source: 

Phytozome 9.0: Brapa_197_peptide.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 17.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

ChineseCabbageCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

ChlamyCyc 7.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ChlamyCyc 6.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ChlamyCyc 5.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ChlamyCyc 4.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v.17.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ChlamyCyc 3.5

Parent

Overview

** Please note: The initial PMN 8.0 release in June 2013 included ChlamyCyc 3.0. Proteins not associated to reactions were removed from ChlamyCyc 3.0 to produce this updated version (ChlamyCyc 3.5).

Protein Sequence Source: 

NCBI (organellar) and primarily Phytozome 8.0 (early release)(nuclear) JGI: Creinhardtii_v5.3_223_peptide.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v.16.5 (primarily
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ChlamyCyc 3.0

Parent

Overview
Released: 
Protein Sequence Source: 

NCBI (organellar) and Phytozome 7.0 (nuclear) JGI:Creinhardtii_169_peptide.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v.16.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ChlamyCyc 2.0

Parent

Overview
Released: 
Protein Sequence Source: 

NCBI (organellar) and Phytozome 7.0 (nuclear) JGI:Creinhardtii_169_peptide.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 15.0
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

ChlamyCyc 1.0

Parent

Overview

ChlamyCyc 1.0 was not officially released at the PMN site because it was generated at the Max Planck Institute and publized at the GoFORSYS website.

ClementineCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CocoaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CommonbeanCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CornCyc 8.0

Parent

Overview
Released: 
Protein Sequence Source: 

EnsemblPlants v34: Zea_mays.AGPv4.pep.all.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 7.0

Parent

Overview
Released: 
Protein Sequence Source: 

MaizeGDB (downloaded from EnsemblPlants):Zea_mays.AGPv3.22.pep.all.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 6.0

Parent

Overview
Released: 
Protein Sequence Source: 

MaizeGDB (downloaded from EnsemblPlants):Zea_mays.AGPv3.22.pep.all.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 5.0

Parent

Overview
Released: 
Protein Sequence Source: 

MaizeGDB (downloaded from EnsemblPlants):Zea_mays.AGPv3.22.pep.all.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 17.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 4.0

Parent

Overview
Released: 

** Please note: The intial PMN 8.0 release in June 2013 included CornCyc 3.0. The complete release in July 2013 included CornCyc 3.5. In CornCyc 3.5, we removed proteins that are no longer associated to any reactions, to complete the process of annotation updates of CornCyc 3.0. In CornCyc 4.0 (released in November 2013), we fixed a technical data-processing error and added missing components to CornCyc.

Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 3.5

Parent

Overview
Released: 

** Please note: The initial PMN 8.0 release in June 2013 included CornCyc 3.0. Proteins not associated to reactions were removed from CornCyc 3.0 to produce this updated version (CornCyc 3.5).

Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 3.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 2.0

Parent

Overview
Released: 
Protein Sequence Source: 

Maizesequence.org (filtered set):http://ftp.maizesequence.org/current/filtered-set/

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 15.0
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

CornCyc 1.0

Parent

Overview
Released: 
Protein Sequence Source: 

Maizesequence.org (filtered set):http://ftp.maizesequence.org/current/filtered-set/

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 15.0
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

CroseusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CrubellaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Csativa_pkCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CsubellipsoideaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

CucumberCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

EgrandisCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

EsalsugineumCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

FlaxCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Fvesca_vescaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

GraimondiiCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

GrapeCyc 7.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

GrapeCyc 6.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

GrapeCyc 5.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v18.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

GrapeCyc 4.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 17.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

GrapeCyc 3.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

GrapeCyc 2.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 15.0
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

GrapeCyc 1.0

Parent

Overview
Released: 
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 15.0
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

KlaxifloraCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

LjaponicusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

LperrieriCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

McommodaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

MdomesticaCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

MguttatusCyc 1.0

Parent

Overview
Protein Sequence Source: 
Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v20.5 (primarily)
SAVI pathway validation lists: 
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference