- About PMN
- PMN Data
FREE LICENSE for ALL data
Please note that this license is freely available to everyone, including commercial users.
The complete download, together with the Pathway Tools software, will allow a user to install and have a local copy of AraCyc/PlantCyc, just like the one visible from the PMN web site. In addition, all of the BioCyc format flat files and a complete biopax.owl file are available as part of this download. You can get more details about the format of all the file types from BioCyc.
Additional custom flat files containing data extracted for ALL of the databases in the latest PMN release can be freely downloaded without a license:
Custom data formats and file naming conventions:
The current BLAST sets provided by the PMN can also be downloaded without registration:
Ensemble-based Enzyme Prediction Program (E2P2) predicts metabolic enzymes in a sequenced genome.
Semi-Automated Validation Infrastructure (SAVI) processes predicted metabolic pathways using pathway meta data such as taxonomic distribution and key reactions and makes decisions about which pathways to keep, remove, or subject to manual validation. More info