ChlamyCyc 3.5

Parent

Overview

** Please note: The initial PMN 8.0 release in June 2013 included ChlamyCyc 3.0. Proteins not associated to reactions were removed from ChlamyCyc 3.0 to produce this updated version (ChlamyCyc 3.5).

Protein Sequence Source: 

NCBI (organellar) and primarily Phytozome 8.0 (early release)(nuclear) JGI: Creinhardtii_v5.3_223_peptide.fa

Enzyme Functional Annotation Method: 
Enzyme Evidence: 
  • Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v.16.5 (primarily
SAVI pathway validation lists: 
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference