Several pathways have been updated based on new data concerning the pathway structure, intermediate compounds, or other types of information *. We have also recorded pathways with new Database IDs that do not have substantially revised content.
Pathway updates in PoplarCyc 3.0
- 4-aminobutyrate degradation I * [derived from 4AMINOBUTMETAB-PWY-ARA (deleted)]
- 4-aminobutyrate degradation IV * [derived from 4AMINOBUTMETAB-PWY-ARA (deleted)]
- adenine and adenosine salvage II * [derived from PWY-5043]
- adenine and adenosine salvage VI * [derived from PWY-5043]
- adenosine nucleotides degradation I * [derived from PWY-5044]
- brassinosteroid biosynthesis I
- brassinosteroid biosynthesis II
- DMNT biosynthesis
- guanine and guanosine salvage II * [derived from PWY-5043]
- guanine and guanosine salvage III * [derived from PWY-5043]
- guanosine nucleotides degradation I * [derived from PWY-5044]
- guanosine nucleotides degradation II * [derived from PWY-5044]
- purine nucleosides salvage II (plant) [split into subpathways]
- purine nucleotides degradation I (plants) [split into subpathways]
- pyrimidine ribonucleotides interconversion
- suberin biosynthesis
- trans-zeatin biosynthesis *
- very long chain fatty acid biosynthesis *
- superpathway of guanosine nucleotides degradation (plants) * [derived from PWY-5044]
Pathway ID changes in PoplarCyc 3.0
- folate polyglutamylation II *
[old ID (PWY-2161B) replaced by new ID (PWY-2161B-PMN)] - nonaprenyl diphosphate biosynthesis III *
[old ID (PWY-5805) replaced by new ID (PWY-5805-ARA)]
* Please note that in general, a pathway is not considered to be "updated" if the reactions and structure of the pathway remain the same, but, new enzymes have been assigned to the pathway, especially if the assignments are based on computational predictions.
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