PMN Release 15.5
Release Information:
The data content of all 126 databases are described on our Content Statistics page while the data sources and methods for each database’s contruction are listed on the Databases Overview page
Past releases are described in the Release Notes Archives and Databases Overview Archives
Update Of:
Overall Highlights:
We are pleased to announce the release of PMN 15.5! In PMN 15.5, twenty-five of our databases have been regenerated using new upstream genome releases. The updated databases are:
AhalleriCyc, BarleyCyc, BrachypodiumCyc, CacuminataCyc, CassavaCyc, ChineseCabbageCyc, ChlamyCyc, CornCyc, DrotundataCyc, EuropeanPearCyc, Fvesca_vescaCyc, GrapeCyc, LjaponicusCyc, MtruncatulaCyc, OilPalmCyc, PhalliiCyc, PoplarCyc, PotatoCyc, RchinensisCyc, SfallaxCyc, TeaCyc, TomatoCyc, ValleyOakCyc, WheatACyc, and ZmarinaCyc.
PMN 15.5 also updates our backend to Pathway Tools 26.0 and contains minor fixes to several databases (fixed broken links, etc.).
- PlantCyc 15.2.0
- AcoeruleaCyc 2.0.2
- AhalleriCyc 4.0.0
- AhypochondriacusCyc 3.0.2
- AlyrataCyc 3.0.2
- AmborellaCyc 3.0.2
- AraCyc 17.2.0
- AsparagusCyc 2.0.2
- BananaCyc 3.0.2
- Boleracea_CapitataCyc 3.0.2
- Boleracea_OleraceaCyc 3.0.2
- BrachypodiumCyc 8.0.0
- Brapa_FpscCyc 3.0.2
- BreadwheatCyc 3.0.2
- BstrictaCyc 3.0.2
- CacuminataCyc 3.0.0
- CannuumCyc 2.0.2
- Carietinum_Icc4958Cyc 3.0.2
- CarnationCyc 2.0.2
- CarrotCyc 3.0.2
- CashewCyc 2.0.2
- CassavaCyc 10.0.0
- CastorbeanCyc 3.0.2
- CcampestrisCyc 1.0.2
- CcapsularisCyc 2.0.2
- CgiganteaCyc 2.0.2
- CgrandifloraCyc 3.0.2
- ChinesecabbageCyc 8.0.0
- ChlamyCyc 10.0.0
- ClementineCyc 3.0.2
- CocoaCyc 3.0.2
- CommonbeanCyc 3.0.2
- CorkoakCyc 1.0.2
- CornCyc 11.0.0
- CroseusCyc 3.0.2
- CrubellaCyc 3.0.2
- Csativa_PkCyc 3.0.2
- CsubellipsoideaCyc 3.0.2
- CucumberCyc 3.0.2
- CvariabilisCyc 1.0.2
- CzofingiensisCyc 2.0.2
- DatepalmCyc 1.0.2
- DrotundataCyc 3.0.0
- EggplantCyc 2.0.2
- EgrandisCyc 3.0.2
- EsalsugineumCyc 3.0.2
- EuropeanpearCyc 2.0.0
- FlaxCyc 3.0.2
- Fvesca_VescaCyc 4.0.0
- GinkgoCyc 1.0.2
- GraimondiiCyc 3.0.2
- GrapeCyc 10.0.0
- HopCyc 2.0.2
- KfedtschenkoiCyc 2.0.2
- KlaxifloraCyc 3.0.2
- LerCyc 1.0.2
- LettuceCyc 1.0.2
- LjaponicusCyc 4.0.0
- LperrieriCyc 3.0.2
- MbalbisianaCyc 1.0.2
- McommodaCyc 3.0.2
- MdomesticaCyc 3.0.2
- MguttatusCyc 3.0.2
- MosobambooCyc 1.0.2
- MossCyc 8.0.2
- MpolymorphaCyc 2.0.2
- MpusillaCyc 3.0.2
- MsinensisCyc 2.1.1
- MtruncatulaCyc 4.0.0
- MuskmelonCyc 1.0.2
- Ntabacum_Tn90Cyc 3.0.2
- ObarthiiCyc 1.0.2
- ObrachyanthaCyc 3.0.2
- Oeuropaea_SylvestrisCyc 2.1.1
- OglaberrimaCyc 3.0.2
- OilpalmCyc 2.0.0
- OilseedrapeCyc 3.0.2
- OlongistaminataCyc 1.0.2
- OlucimarinusCyc 3.0.2
- OmeridionalisCyc 1.0.2
- OnivaraCyc 1.0.2
- OpunctataCyc 3.0.2
- OrufipogonCyc 3.0.2
- OryzaCyc 7.2.1
- OthomaeumCyc 3.0.2
- PapayaCyc 8.0.2
- PaxillarisCyc 2.0.2
- PhalliiCyc 3.0.0
- PigeonpeaCyc 1.0.2
- PineappleCyc 3.0.2
- PoplarCyc 13.0.0
- PotatoCyc 7.0.0
- PpersicaCyc 3.0.2
- QuinoaCyc 2.0.2
- RchinensisCyc 3.0.0
- RedcloverCyc 3.0.2
- RedsageCyc 3.0.2
- RmultifloraCyc 2.0.2
- RubbertreeCyc 1.0.2
- SacredlotusCyc 1.0.2
- SelaginellaCyc 8.0.2
- SetariaCyc 7.1.1
- SfallaxCyc 3.0.0
- SoleraceaCyc 3.0.2
- SorghumbicolorCyc 7.1.1
- SoyCyc 10.1.0
- SpennelliiCyc 2.0.2
- SpiderflowerCyc 1.0.2
- SpirodelaCyc 5.0.2
- StoraCyc 1.0.1
- SugarbeetCyc 3.0.2
- SunflowerCyc 2.0.2
- SviridisCyc 3.1.1
- SweetcherryCyc 1.0.2
- SweetorangeCyc 3.0.2
- SwitchgrassCyc 7.0.2
- TeaCyc 2.0.0
- TomatoCyc 6.0.0
- TparvulaCyc 3.0.2
- ValleyoakCyc 2.0.0
- VcarteriCyc 3.0.2
- WatermelonCyc 1.0.2
- WheataCyc 6.0.0
- WheatdCyc 5.0.2
- WildsugarcaneCyc 1.1.1
- ZmarinaCyc 4.0.0
| Name | Pathways | Enzymes | Reactions | Compounds | Citations |
| PlantCyc | 1164 | 4217 | 5392 | 4899 | 11042 |
| AcoeruleaCyc | 493 | 9985 | 3120 | 2327 | 3943 |
| AhalleriCyc | 476 | 9165 | 2995 | 2266 | 71 |
| AhypochondriacusCyc | 485 | 5496 | 2984 | 2216 | 3907 |
| AlyrataCyc | 484 | 7122 | 3057 | 2229 | 3725 |
| AmborellaCyc | 472 | 5324 | 3074 | 2290 | 3835 |
| AraCyc | 650 | 8759 | 3793 | 3029 | 7268 |
| AsparagusCyc | 462 | 5914 | 2974 | 2245 | 3777 |
| BananaCyc | 480 | 9952 | 3027 | 2266 | 3875 |
| BarleyCyc | 472 | 7942 | 2824 | 2215 | 492 |
| Boleracea_CapitataCyc | 467 | 7598 | 2963 | 2176 | 3667 |
| Boleracea_OleraceaCyc | 481 | 12263 | 3136 | 2292 | 3709 |
| BrachypodiumCyc | 470 | 11923 | 2976 | 2306 | 66 |
| Brapa_FpscCyc | 481 | 9765 | 3047 | 2218 | 3731 |
| BreadwheatCyc | 496 | 30682 | 3271 | 2473 | 3994 |
| BstrictaCyc | 474 | 6506 | 3016 | 2202 | 3651 |
| CacuminataCyc | 474 | 6757 | 2913 | 2247 | 98 |
| CannuumCyc | 512 | 8164 | 3147 | 2419 | 4155 |
| Carietinum_Icc4958Cyc | 493 | 6633 | 3236 | 2363 | 3937 |
| CarnationCyc | 490 | 7514 | 3106 | 2340 | 3977 |
| CarrotCyc | 486 | 7185 | 3033 | 2252 | 3902 |
| CashewCyc | 496 | 18887 | 3150 | 2355 | 3976 |
| CassavaCyc | 486 | 13324 | 3001 | 2311 | 184 |
| CastorbeanCyc | 521 | 6895 | 3756 | 2835 | 4067 |
| CcampestrisCyc | 470 | 9592 | 2901 | 2155 | 3673 |
| CcapsularisCyc | 482 | 5217 | 2966 | 2175 | 3859 |
| CgiganteaCyc | 483 | 4760 | 2985 | 2227 | 3871 |
| CgrandifloraCyc | 471 | 6121 | 2983 | 2173 | 3626 |
| ChinesecabbageCyc | 471 | 20753 | 3040 | 2309 | 105 |
| ChlamyCyc | 385 | 6413 | 2556 | 1899 | 3264 |
| ClementineCyc | 488 | 8423 | 3042 | 2271 | 3911 |
| CocoaCyc | 498 | 8866 | 3164 | 2378 | 4031 |
| CommonbeanCyc | 501 | 8709 | 3089 | 2283 | 3968 |
| CorkoakCyc | 522 | 14428 | 3978 | 2999 | 4100 |
| CornCyc | 521 | 16392 | 3230 | 2558 | 4270 |
| CroseusCyc | 500 | 5483 | 3069 | 2299 | 4023 |
| CrubellaCyc | 472 | 6609 | 3015 | 2201 | 3647 |
| Csativa_PkCyc | 493 | 5872 | 3142 | 2327 | 3927 |
| CsubellipsoideaCyc | 312 | 2266 | 2256 | 1647 | 2909 |
| CucumberCyc | 481 | 7317 | 2917 | 2154 | 3894 |
| CvariabilisCyc | 334 | 17511 | 2441 | 1756 | 2938 |
| CzofingiensisCyc | 332 | 2971 | 2567 | 1925 | 2920 |
| DatepalmCyc | 466 | 6043 | 2891 | 2162 | 3824 |
| DrotundataCyc | 489 | 13229 | 3089 | 2412 | 71 |
| EggplantCyc | 508 | 6949 | 3215 | 2372 | 4089 |
| EgrandisCyc | 506 | 11549 | 3136 | 2355 | 3983 |
| EsalsugineumCyc | 477 | 6877 | 3014 | 2194 | 3662 |
| EuropeanpearCyc | 483 | 8263 | 2962 | 2268 | 54 |
| FlaxCyc | 512 | 10592 | 3230 | 2430 | 4056 |
| Fvesca_VescaCyc | 489 | 13895 | 3002 | 2300 | 63 |
| GinkgoCyc | 453 | 7884 | 2958 | 2225 | 3674 |
| GraimondiiCyc | 490 | 18197 | 3141 | 2350 | 3881 |
| GrapeCyc | 502 | 9470 | 3100 | 2401 | 461 |
| HopCyc | 497 | 12074 | 3223 | 2429 | 3982 |
| KfedtschenkoiCyc | 482 | 10385 | 3061 | 2293 | 3833 |
| KlaxifloraCyc | 472 | 16279 | 3023 | 2259 | 3809 |
| LerCyc | 524 | 7073 | 3253 | 2992 | 8604 |
| LettuceCyc | 502 | 14374 | 3161 | 2354 | 3869 |
| LjaponicusCyc | 487 | 6684 | 2933 | 2278 | 175 |
| LperrieriCyc | 488 | 8210 | 3018 | 2258 | 3902 |
| MbalbisianaCyc | 475 | 7049 | 2877 | 2138 | 3832 |
| McommodaCyc | 310 | 2044 | 2171 | 1565 | 2798 |
| MdomesticaCyc | 508 | 10559 | 3179 | 2392 | 4068 |
| MguttatusCyc | 487 | 7771 | 3074 | 2338 | 3858 |
| MosobambooCyc | 484 | 12574 | 3108 | 2337 | 3865 |
| MossCyc | 415 | 17888 | 2868 | 2043 | 3350 |
| MpolymorphaCyc | 422 | 4841 | 2711 | 1990 | 3411 |
| MpusillaCyc | 301 | 1971 | 2085 | 1539 | 2775 |
| MsinensisCyc | 494 | 17547 | 3207 | 2393 | 3884 |
| MtruncatulaCyc | 520 | 8934 | 3133 | 2446 | 297 |
| MuskmelonCyc | 483 | 5571 | 2979 | 2183 | 3873 |
| Ntabacum_Tn90Cyc | 547 | 14177 | 3403 | 2601 | 4370 |
| ObarthiiCyc | 493 | 7994 | 3097 | 2314 | 3954 |
| ObrachyanthaCyc | 489 | 6227 | 3034 | 2281 | 3927 |
| Oeuropaea_SylvestrisCyc | 485 | 8643 | 3073 | 2305 | 3889 |
| OglaberrimaCyc | 494 | 6512 | 3042 | 2288 | 3921 |
| OilpalmCyc | 449 | 6350 | 2778 | 2143 | 64 |
| OilseedrapeCyc | 496 | 21070 | 3240 | 2400 | 4014 |
| OlongistaminataCyc | 498 | 7031 | 3089 | 2327 | 3957 |
| OlucimarinusCyc | 294 | 1701 | 1953 | 1425 | 2747 |
| OmeridionalisCyc | 475 | 8608 | 2966 | 2276 | 3922 |
| OnivaraCyc | 495 | 9055 | 3076 | 2293 | 3947 |
| OpunctataCyc | 484 | 8371 | 3022 | 2271 | 3907 |
| OrufipogonCyc | 496 | 8833 | 3118 | 2331 | 3961 |
| OryzaCyc | 606 | 8452 | 3846 | 2988 | 5212 |
| OthomaeumCyc | 460 | 5389 | 2868 | 2133 | 3775 |
| PapayaCyc | 485 | 5201 | 3114 | 2312 | 3825 |
| PaxillarisCyc | 505 | 8094 | 3217 | 2422 | 3971 |
| PhalliiCyc | 480 | 8632 | 2933 | 2238 | 63 |
| PigeonpeaCyc | 498 | 7345 | 3157 | 2345 | 3930 |
| PineappleCyc | 464 | 5698 | 2894 | 2148 | 3795 |
| PoplarCyc | 494 | 11838 | 3048 | 2340 | 557 |
| PotatoCyc | 527 | 11608 | 3211 | 2534 | 835 |
| PpersicaCyc | 499 | 10923 | 3053 | 2267 | 3965 |
| QuinoaCyc | 496 | 10629 | 3141 | 2357 | 3952 |
| RchinensisCyc | 495 | 9431 | 3095 | 2411 | 75 |
| RedcloverCyc | 507 | 8860 | 3209 | 2404 | 3977 |
| RedsageCyc | 495 | 7361 | 3178 | 2397 | 3892 |
| RmultifloraCyc | 512 | 13358 | 3279 | 2481 | 4030 |
| RubbertreeCyc | 516 | 9810 | 3334 | 2526 | 4055 |
| SacredlotusCyc | 471 | 8966 | 2961 | 2218 | 3776 |
| SelaginellaCyc | 422 | 6216 | 2799 | 2086 | 3436 |
| SetariaCyc | 489 | 9156 | 3053 | 2269 | 3876 |
| SfallaxCyc | 409 | 10195 | 2623 | 2009 | 62 |
| SoleraceaCyc | 490 | 5238 | 3016 | 2228 | 4032 |
| SorghumbicolorCyc | 492 | 9925 | 3064 | 2297 | 3887 |
| SoyCyc | 589 | 19067 | 3472 | 2698 | 5316 |
| SpennelliiCyc | 508 | 7450 | 3176 | 2355 | 4013 |
| SpiderflowerCyc | 472 | 9139 | 3017 | 2210 | 3643 |
| SpirodelaCyc | 455 | 4413 | 2748 | 2017 | 3653 |
| SugarbeetCyc | 496 | 5718 | 3103 | 2307 | 3956 |
| SunflowerCyc | 497 | 11386 | 3134 | 2328 | 3904 |
| SviridisCyc | 485 | 10539 | 3072 | 2274 | 3846 |
| SweetcherryCyc | 501 | 6757 | 3130 | 2341 | 3985 |
| SweetorangeCyc | 493 | 11605 | 3144 | 2343 | 3963 |
| SwitchgrassCyc | 506 | 25703 | 3240 | 2424 | 3986 |
| TeaCyc | 487 | 10876 | 2988 | 2341 | 218 |
| TomatoCyc | 537 | 7582 | 3182 | 2595 | 1131 |
| TparvulaCyc | 475 | 5908 | 3050 | 2227 | 3674 |
| ValleyoakCyc | 483 | 9378 | 3063 | 2376 | 57 |
| VcarteriCyc | 321 | 2804 | 2272 | 1635 | 2788 |
| WatermelonCyc | 474 | 4917 | 2887 | 2149 | 3854 |
| WheataCyc | 474 | 11254 | 3028 | 2342 | 72 |
| WheatdCyc | 520 | 57062 | 3611 | 2703 | 4060 |
| WildsugarcaneCyc | 500 | 19681 | 3217 | 2422 | 3953 |
| ZmarinaCyc | 436 | 4635 | 2637 | 1994 | 56 |