PMN Release 15.0
Release Information:
The data content of all 126 databases are described on our Content Statistics page while the data sources and methods for each database’s contruction are listed on the Databases Overview page
Past releases are described in the Release Notes Archives and Databases Overview Archives
Update Of:
Overall Highlights:
We are pleased to announce the release of PMN 15. This release includes a new species, new features, and fixes to existing species:
- We have released a new pathway genome database, SennaCyc, for the legume Senna tora
- PMN now uses Pathway Tools 24.0, with new features that include:
- All pathways that include transport between subcellular compartments are now shown with the compounds moving across the membranes. For example, the glutamate-glutamine shuttle in AraCyc
- You can now pull up a SmartTable of all pathways, reactions, etc. for an organism right from the organism info page (e.g. this page for AraCyc) by clicking the orange SmartTable buttons next to the database statistics
- The previous release of OryzaCyc erroneously included old enzyme data alongside the current data. The old data has now been removed
- PlantCyc 15.0.1
- AcoeruleaCyc 2.0.1
- AhalleriCyc 3.0.1
- AhypochondriacusCyc 3.0.1
- AlyrataCyc 3.0.1
- AmborellaCyc 3.0.1
- AraCyc 17.1.1
- AsparagusCyc 2.0.1
- BananaCyc 3.0.1
- BarleyCyc 7.0.1
- Boleracea_CapitataCyc 3.0.1
- Boleracea_OleraceaCyc 3.0.1
- BrachypodiumCyc 7.0.1
- Brapa_FpscCyc 3.0.1
- BreadwheatCyc 3.0.1
- BstrictaCyc 3.0.1
- CacuminataCyc 2.0.1
- CannuumCyc 2.0.1
- Carietinum_Icc4958Cyc 3.0.1
- CarnationCyc 2.0.1
- CarrotCyc 3.0.1
- CashewCyc 2.0.1
- CassavaCyc 9.0.1
- CastorbeanCyc 3.0.1
- CcapsularisCyc 2.0.1
- CgiganteaCyc 2.0.1
- CgrandifloraCyc 3.0.1
- ChinesecabbageCyc 7.0.1
- ChlamyCyc 9.0.1
- ClementineCyc 3.0.1
- CocoaCyc 3.0.1
- CommonbeanCyc 3.0.1
- CornCyc 10.0.1
- CroseusCyc 3.0.1
- CrubellaCyc 3.0.1
- Csativa_PkCyc 3.0.1
- CsubellipsoideaCyc 3.0.1
- CucumberCyc 3.0.1
- CzofingiensisCyc 2.0.1
- DrotundataCyc 2.0.1
- EggplantCyc 2.0.1
- EgrandisCyc 3.0.1
- EsalsugineumCyc 3.0.1
- FlaxCyc 3.0.1
- Fvesca_VescaCyc 3.0.1
- GraimondiiCyc 3.0.1
- GrapeCyc 9.0.1
- HopCyc 2.0.1
- KfedtschenkoiCyc 2.0.1
- KlaxifloraCyc 3.0.1
- LjaponicusCyc 3.0.1
- LperrieriCyc 3.0.1
- McommodaCyc 3.0.1
- MdomesticaCyc 3.0.1
- MguttatusCyc 3.0.1
- MossCyc 8.0.1
- MpolymorphaCyc 2.0.1
- MpusillaCyc 3.0.1
- MsinensisCyc 2.0.1
- MtruncatulaCyc 3.0.1
- Ntabacum_Tn90Cyc 3.0.1
- ObrachyanthaCyc 3.0.1
- Oeuropaea_SylvestrisCyc 2.0.1
- OglaberrimaCyc 3.0.1
- OilseedrapeCyc 3.0.1
- OlucimarinusCyc 3.0.1
- OpunctataCyc 3.0.1
- OrufipogonCyc 3.0.1
- OryzaCyc 7.2.0
- OthomaeumCyc 3.0.1
- PapayaCyc 8.0.1
- PaxillarisCyc 2.0.1
- PhalliiCyc 2.0.1
- PineappleCyc 3.0.1
- PoplarCyc 12.0.1
- PotatoCyc 6.0.1
- PpersicaCyc 3.0.1
- QuinoaCyc 2.0.1
- RchinensisCyc 2.0.1
- RedcloverCyc 3.0.1
- RedsageCyc 3.0.1
- RmultifloraCyc 2.0.1
- SelaginellaCyc 8.0.1
- SetariaCyc 7.0.1
- SfallaxCyc 2.0.1
- SoleraceaCyc 3.0.1
- SorghumbicolorCyc 7.0.1
- SoyCyc 10.0.1
- SpennelliiCyc 2.0.1
- SpirodelaCyc 5.0.1
- SugarbeetCyc 3.0.1
- SunflowerCyc 2.0.1
- SviridisCyc 3.0.1
- SweetorangeCyc 3.0.1
- SwitchgrassCyc 7.0.1
- TomatoCyc 5.0.1
- TparvulaCyc 3.0.1
- VcarteriCyc 3.0.1
- WheataCyc 5.0.1
- WheatdCyc 5.0.1
- ZmarinaCyc 3.0.1
- CcampestrisCyc 1.0.1
- CorkoakCyc 1.0.1
- CvariabilisCyc 1.0.1
- DatepalmCyc 1.0.1
- EuropeanpearCyc 1.0.1
- GinkgoCyc 1.0.1
- LerCyc 1.0.1
- LettuceCyc 1.0.1
- MbalbisianaCyc 1.0.1
- MosobambooCyc 1.0.1
- MuskmelonCyc 1.0.1
- ObarthiiCyc 1.0.1
- OilpalmCyc 1.0.1
- OlongistaminataCyc 1.0.1
- OmeridionalisCyc 1.0.1
- OnivaraCyc 1.0.1
- PigeonpeaCyc 1.0.1
- RubbertreeCyc 1.0.1
- SacredlotusCyc 1.0.1
- SpiderflowerCyc 1.0.1
- StoraCyc 1.0.0
- SweetcherryCyc 1.0.1
- TeaCyc 1.0.1
- ValleyoakCyc 1.0.1
- WatermelonCyc 1.0.1
- WildsugarcaneCyc 1.0.1
| Name | Pathways | Enzymes | Reactions | Compounds | Citations |
|---|---|---|---|---|---|
| StoraCyc | 487 | 6587 | 2877 | 2202 | 1699 |
| AhypochondriacusCyc | 485 | 5496 | 2984 | 2217 | 3888 |
| AhalleriCyc | 470 | 6163 | 3062 | 2231 | 3600 |
| AcoeruleaCyc | 493 | 9985 | 3120 | 2328 | 3924 |
| PlantCyc | 1163 | 3769 | 5234 | 4807 | 14783 |
| GrapeCyc | 500 | 7448 | 3149 | 2391 | 4035 |
| BreadwheatCyc | 496 | 30682 | 3271 | 2474 | 3975 |
| SoleraceaCyc | 490 | 5237 | 3016 | 2229 | 4013 |
| TomatoCyc | 540 | 7991 | 3319 | 2516 | 4411 |
| SviridisCyc | 485 | 10539 | 3071 | 2275 | 3827 |
| SetariaCyc | 489 | 9156 | 3052 | 2270 | 3857 |
| RedsageCyc | 495 | 7361 | 3178 | 2398 | 3872 |
| PoplarCyc | 500 | 13454 | 3190 | 2380 | 3930 |
| LjaponicusCyc | 506 | 9975 | 3234 | 2426 | 4022 |
| Carietinum_Icc4958Cyc | 493 | 6633 | 3236 | 2365 | 3912 |
| CroseusCyc | 500 | 5483 | 3069 | 2301 | 4004 |
| AraCyc | 650 | 8556 | 3793 | 3030 | 7221 |
| KfedtschenkoiCyc | 482 | 10385 | 3061 | 2294 | 3814 |
| MsinensisCyc | 494 | 17547 | 3206 | 2394 | 3865 |
| SfallaxCyc | 403 | 6745 | 2655 | 1955 | 3262 |
| SpennelliiCyc | 508 | 7450 | 3176 | 2357 | 3994 |
| EggplantCyc | 508 | 6949 | 3215 | 2375 | 4070 |
| RmultifloraCyc | 512 | 13358 | 3279 | 2483 | 4011 |
| RchinensisCyc | 509 | 8938 | 3200 | 2413 | 4027 |
| PaxillarisCyc | 505 | 8094 | 3217 | 2425 | 3946 |
| PhalliiCyc | 481 | 8704 | 3022 | 2241 | 3832 |
| Oeuropaea_SylvestrisCyc | 485 | 8643 | 3072 | 2307 | 3869 |
| MpolymorphaCyc | 422 | 4841 | 2711 | 1992 | 3392 |
| HopCyc | 497 | 12073 | 3223 | 2429 | 3963 |
| SunflowerCyc | 497 | 11386 | 3134 | 2330 | 3879 |
| DrotundataCyc | 450 | 4721 | 2816 | 2125 | 3616 |
| CarnationCyc | 490 | 7514 | 3106 | 2341 | 3958 |
| CcapsularisCyc | 482 | 5217 | 2966 | 2177 | 3840 |
| CzofingiensisCyc | 332 | 2971 | 2567 | 1927 | 2900 |
| QuinoaCyc | 496 | 10629 | 3141 | 2359 | 3933 |
| CannuumCyc | 512 | 8164 | 3147 | 2420 | 4136 |
| CacuminataCyc | 489 | 7360 | 3146 | 2355 | 3881 |
| CgiganteaCyc | 483 | 4760 | 2985 | 2230 | 3852 |
| AsparagusCyc | 462 | 5914 | 2974 | 2247 | 3757 |
| CashewCyc | 496 | 18887 | 3150 | 2357 | 3957 |
| ZmarinaCyc | 436 | 4638 | 2672 | 1967 | 3468 |
| CornCyc | 556 | 27682 | 3377 | 2592 | 5245 |
| Csativa_PkCyc | 493 | 5872 | 3142 | 2328 | 3908 |
| CastorbeanCyc | 521 | 6895 | 3756 | 2840 | 4047 |
| SwitchgrassCyc | 506 | 25703 | 3240 | 2425 | 3967 |
| SorghumbicolorCyc | 492 | 9924 | 3063 | 2298 | 3868 |
| TparvulaCyc | 475 | 5908 | 3050 | 2229 | 3655 |
| SweetorangeCyc | 493 | 11605 | 3144 | 2345 | 3943 |
| SugarbeetCyc | 496 | 5718 | 3103 | 2309 | 3937 |
| VcarteriCyc | 321 | 2804 | 2272 | 1635 | 2769 |
| WheataCyc | 484 | 7186 | 3121 | 2328 | 3864 |
| SpirodelaCyc | 455 | 4413 | 2748 | 2018 | 3634 |
| SelaginellaCyc | 422 | 6216 | 2799 | 2087 | 3417 |
| OthomaeumCyc | 460 | 5389 | 2868 | 2135 | 3756 |
| SoyCyc | 589 | 19055 | 3472 | 2695 | 5295 |
| RedcloverCyc | 507 | 8860 | 3209 | 2406 | 3958 |
| PineappleCyc | 464 | 5698 | 2894 | 2149 | 3776 |
| OlucimarinusCyc | 294 | 1701 | 1953 | 1425 | 2727 |
| PapayaCyc | 485 | 5201 | 3114 | 2314 | 3806 |
| PotatoCyc | 521 | 11429 | 3272 | 2497 | 4209 |
| MguttatusCyc | 487 | 7771 | 3074 | 2340 | 3839 |
| OrufipogonCyc | 496 | 8833 | 3118 | 2332 | 3942 |
| OpunctataCyc | 484 | 8371 | 3022 | 2273 | 3888 |
| OryzaCyc | 606 | 8452 | 3846 | 2987 | 5198 |
| PpersicaCyc | 499 | 10923 | 3053 | 2269 | 3946 |
| MdomesticaCyc | 508 | 10558 | 3179 | 2393 | 4049 |
| KlaxifloraCyc | 472 | 16279 | 3023 | 2260 | 3790 |
| LperrieriCyc | 488 | 8210 | 3018 | 2260 | 3883 |
| GraimondiiCyc | 490 | 18197 | 3141 | 2351 | 3862 |
| McommodaCyc | 310 | 2044 | 2171 | 1564 | 2778 |
| MossCyc | 415 | 17888 | 2868 | 2046 | 3330 |
| MpusillaCyc | 301 | 1971 | 2085 | 1539 | 2755 |
| Ntabacum_Tn90Cyc | 547 | 14176 | 3403 | 2603 | 4351 |
| MtruncatulaCyc | 524 | 10909 | 3269 | 2460 | 4081 |
| OilseedrapeCyc | 496 | 21067 | 3240 | 2403 | 3994 |
| ObrachyanthaCyc | 489 | 6227 | 3034 | 2282 | 3908 |
| OglaberrimaCyc | 494 | 6512 | 3042 | 2289 | 3902 |
| CucumberCyc | 481 | 7317 | 2917 | 2155 | 3875 |
| FlaxCyc | 512 | 10589 | 3230 | 2433 | 4037 |
| EgrandisCyc | 506 | 11549 | 3136 | 2357 | 3964 |
| EsalsugineumCyc | 477 | 6877 | 3014 | 2196 | 3642 |
| Fvesca_VescaCyc | 494 | 10213 | 3055 | 2257 | 3926 |
| BarleyCyc | 519 | 57690 | 3489 | 2642 | 4023 |
| CassavaCyc | 492 | 8603 | 3111 | 2322 | 3864 |
| BstrictaCyc | 474 | 6506 | 3016 | 2205 | 3631 |
| CarrotCyc | 486 | 7185 | 3033 | 2253 | 3883 |
| ChlamyCyc | 380 | 3367 | 2608 | 1879 | 4095 |
| ClementineCyc | 488 | 8423 | 3042 | 2273 | 3892 |
| CocoaCyc | 498 | 8866 | 3164 | 2381 | 4012 |
| ChinesecabbageCyc | 478 | 9402 | 3027 | 2188 | 3708 |
| CgrandifloraCyc | 471 | 6121 | 2983 | 2175 | 3607 |
| CommonbeanCyc | 501 | 8708 | 3089 | 2284 | 3949 |
| CrubellaCyc | 472 | 6609 | 3015 | 2205 | 3628 |
| CsubellipsoideaCyc | 312 | 2266 | 2256 | 1648 | 2889 |
| Boleracea_OleraceaCyc | 481 | 12263 | 3136 | 2295 | 3689 |
| BrachypodiumCyc | 479 | 10065 | 3051 | 2278 | 3823 |
| Boleracea_CapitataCyc | 467 | 7598 | 2963 | 2178 | 3648 |
| BananaCyc | 480 | 9952 | 3027 | 2268 | 3856 |
| Brapa_FpscCyc | 481 | 9765 | 3047 | 2220 | 3710 |
| AlyrataCyc | 484 | 7122 | 3057 | 2232 | 3706 |
| AmborellaCyc | 472 | 5324 | 3074 | 2292 | 3816 |
| WheatdCyc | 520 | 57062 | 3611 | 2704 | 4034 |
| LerCyc | 524 | 7073 | 3253 | 2996 | 8585 |
| PigeonpeaCyc | 498 | 7345 | 3157 | 2346 | 3911 |
| TeaCyc | 484 | 8505 | 3069 | 2307 | 3884 |
| CvariabilisCyc | 334 | 17511 | 2441 | 1757 | 2918 |
| WatermelonCyc | 474 | 4916 | 2887 | 2150 | 3829 |
| MuskmelonCyc | 483 | 5571 | 2979 | 2184 | 3854 |
| CcampestrisCyc | 470 | 9592 | 2901 | 2156 | 3653 |
| OilpalmCyc | 459 | 9243 | 2906 | 2181 | 3769 |
| GinkgoCyc | 453 | 7884 | 2958 | 2228 | 3654 |
| RubbertreeCyc | 516 | 9809 | 3334 | 2528 | 4036 |
| LettuceCyc | 502 | 14374 | 3161 | 2356 | 3850 |
| MbalbisianaCyc | 475 | 7049 | 2877 | 2139 | 3812 |
| SacredlotusCyc | 471 | 8966 | 2961 | 2219 | 3756 |
| ObarthiiCyc | 493 | 7994 | 3097 | 2316 | 3934 |
| OlongistaminataCyc | 498 | 7031 | 3089 | 2329 | 3938 |
| OmeridionalisCyc | 475 | 8608 | 2966 | 2277 | 3903 |
| OnivaraCyc | 495 | 9055 | 3076 | 2295 | 3928 |
| DatepalmCyc | 466 | 6043 | 2891 | 2164 | 3805 |
| MosobambooCyc | 484 | 12574 | 3108 | 2340 | 3845 |
| SweetcherryCyc | 501 | 6757 | 3130 | 2342 | 3966 |
| EuropeanpearCyc | 497 | 10116 | 3132 | 2322 | 3949 |
| ValleyoakCyc | 516 | 13100 | 3341 | 2514 | 4051 |
| CorkoakCyc | 522 | 14428 | 3978 | 3001 | 4077 |
| WildsugarcaneCyc | 500 | 19681 | 3216 | 2424 | 3934 |
| SpiderflowerCyc | 472 | 9139 | 3017 | 2212 | 3623 |