AmborellaCyc 3.0.2

Taxonomic Range:
Amborella trichopoda
Protein Sequence Source:

Phytozome v12: Atrichopoda_291_v1.0.protein.fa‚Äã

Enzyme Functional Annotation Method:

E2P2v4.0

Enzyme Evidence:
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program
Pathway Tools 26.0
SAVI pathway validation list:

MCP 2.0
AIPP 6.0
CAPP 6.0
CVP 6.0
NPP 9.0
UPP 9.0

Pathway Evidence:
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Link to PGDB: AmborellaCyc

Number of Pathways:
472
Number of Reactions:
3074
Number of Compounds:
2290
Number of Enzymes:
5324
Number of Citations:
3835