RedsageCyc 2.0

Parent

Overview
Released: 
July 2018
Taxonomic Range: 
Salvia miltiorrhiza Bunge
Protein Sequence Source: 

Herbal Medicine Omics Database: danshen.pep (file no longer available for download online)

Enzyme Functional Annotation Method: 

E2P2 v3.1

Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools v21.5 (primarily)
SAVI pathway validation lists: 
MCP 2.0
AIPP 5.0
CAPP 5.0
CVP 5.0
NPP 8.0
UPP 8.0
Pathway Evidence: 
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference
Link to PGDB: 
RedsageCyc

  

The PMN is funded by the National Science Foundation (Grant #: 1546838, 1026003 and 0640769) and the Department of Energy (BER Grant #:  ER65472), governed by an Editorial Board composed of internationally renowned scientists, and executed at the Carnegie Institution for Science, Department of Plant Biology.