Databases Overview

Taxonomic Range:

Ostreococcus lucimarinus

Protein Sequence Source:

Phytozome v12: Olucimarinus_231_v2.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OlucimarinusCyc

Content Statistics

Number of Pathways:

294

Number of Reactions:

1953

Number of Compounds:

1425

Number of Enzymes:

1701

Number of Citations:

2747

RchinensisCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Rosa chinensis

Protein Sequence Source:

Genome Database for Rosaceae: Rosa_chinensis_Old_Blush_homozygous_genome-v2.0.a1.prot.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RchinensisCyc

Content Statistics

Number of Pathways:

495

Number of Reactions:

3095

Number of Compounds:

2411

Number of Enzymes:

9431

Number of Citations:

BstrictaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Boechera stricta

Protein Sequence Source:

Phytozome v12: Bstricta_278_v1.2.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BstrictaCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

3016

Number of Compounds:

2202

Number of Enzymes:

6506

Number of Citations:

3651

SugarbeetCyc 3.0.2

Parent

Overview

Released:

Beta vulgaris subsp. vulgaris

Taxonomic Range:

Protein Sequence Source:

The Beta vulgaris Resource: BeetSet-2.genes.1408.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SugarbeetCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3103

Number of Compounds:

2307

Number of Enzymes:

5718

Number of Citations:

3956

CocoaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Theobroma cacao

Protein Sequence Source:

Phytozome v12: Tcacao_233_v1.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CocoaCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3164

Number of Compounds:

2378

Number of Enzymes:

8866

Number of Citations:

4031

EuropeanpearCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Pyrus communis

Protein Sequence Source:

Genome Database for Rosaceae: PyrusCommunis_BartlettDHv2.0.pep.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EuropeanpearCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

2962

Number of Compounds:

2268

Number of Enzymes:

8263

Number of Citations:

MguttatusCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Mimulus guttatus

Protein Sequence Source:

Phytozome v12: Mguttatus_256_v2.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MguttatusCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

3074

Number of Compounds:

2338

Number of Enzymes:

7771

Number of Citations:

3858

MosobambooCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Phyllostachys edulis

Protein Sequence Source:

GIGA DB: Bamboo.Hic.pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MosobambooCyc

Content Statistics

Number of Pathways:

484

Number of Reactions:

3108

Number of Compounds:

2337

Number of Enzymes:

12574

Number of Citations:

3865

OmeridionalisCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza meridionalis

Protein Sequence Source:

Ensembl: Oryza_meridionalis.Oryza_meridionalis_v1.3.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OmeridionalisCyc

Content Statistics

Number of Pathways:

475

Number of Reactions:

2966

Number of Compounds:

2276

Number of Enzymes:

8608

Number of Citations:

3922

RedcloverCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Trifolium pratense

Protein Sequence Source:

Phytozome v12: Tpratense_385_v2.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RedcloverCyc

Content Statistics

Number of Pathways:

507

Number of Reactions:

3209

Number of Compounds:

2404

Number of Enzymes:

8860

Number of Citations:

3977

CacuminataCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Camptotheca acuminata

Protein Sequence Source:

Medicinal Plant Genomics Resource: Lachesis_assembly.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CacuminataCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

2913

Number of Compounds:

2247

Number of Enzymes:

6757

Number of Citations:

SunflowerCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Helianthus annuus

Protein Sequence Source:

Phytozome v12: Hannuus_494_r1.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SunflowerCyc

Content Statistics

Number of Pathways:

497

Number of Reactions:

3134

Number of Compounds:

2328

Number of Enzymes:

11386

Number of Citations:

3904

CommonbeanCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Phaseolus vulgaris

Protein Sequence Source:

Phytozome v12: Pvulgaris_442_v2.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CommonbeanCyc

Content Statistics

Number of Pathways:

501

Number of Reactions:

3089

Number of Compounds:

2283

Number of Enzymes:

8709

Number of Citations:

3968

FlaxCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Linum usitatissimum

Protein Sequence Source:

Phytozome v12: Lusitatissimum_200_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

FlaxCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3230

Number of Compounds:

2430

Number of Enzymes:

10592

Number of Citations:

4056

MossCyc 8.0.2

Parent

Overview

Released:

Taxonomic Range:

Physcomitrella patens

Protein Sequence Source:

Phytozome v12: Ppatens_318_v3.3.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

MossCyc

Content Statistics

Number of Pathways:

415

Number of Reactions:

2868

Number of Compounds:

2043

Number of Enzymes:

17888

Number of Citations:

3350

OnivaraCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza nivara

Protein Sequence Source:

Ensembl: Oryza_nivara.Oryza_nivara_v1.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OnivaraCyc

Content Statistics

Number of Pathways:

495

Number of Reactions:

3076

Number of Compounds:

2293

Number of Enzymes:

9055

Number of Citations:

3947

RedsageCyc 3.0.2

Parent

Overview

Released:

Salvia miltiorrhiza Bunge

Taxonomic Range:

Protein Sequence Source:

Herbal Medicine Omics Database: danshen.pep (file no longer available for download online)

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RedsageCyc

Content Statistics

Number of Pathways:

495

Number of Reactions:

3178

Number of Compounds:

2397

Number of Enzymes:

7361

Number of Citations:

3892

CannuumCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Capsicum annuum

Protein Sequence Source:

SGN: Pepper.v.1.55.PEP.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CannuumCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3147

Number of Compounds:

2419

Number of Enzymes:

8164

Number of Citations:

4155

SviridisCyc 3.1.1

Parent

Overview

Released:

Taxonomic Range:

Setaria viridis

Protein Sequence Source:

Phytozome v12: Sviridis_500_v2.1.protein_primaryTranscriptOnly.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SviridisCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

3072

Number of Compounds:

2274

Number of Enzymes:

10539

Number of Citations:

3846

CorkoakCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Quercus suber

Protein Sequence Source:

NCBI: GCF_002906115.1_CorkOak1.0_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CorkoakCyc

Content Statistics

Number of Pathways:

522

Number of Reactions:

3978

Number of Compounds:

2999

Number of Enzymes:

14428

Number of Citations:

4100

Fvesca_VescaCyc 4.0.0

Parent

Overview

Released:

Fragaria vesca subsp. Vesca

Taxonomic Range:

Protein Sequence Source:

Phytozome v13: Fvesca_677_v4.0.a2.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Fvesca_VescaCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3002

Number of Compounds:

2300

Number of Enzymes:

13895

Number of Citations:

MpolymorphaCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Marchantia polymorpha

Protein Sequence Source:

Phytozome v12: Mpolymorpha_320_v3.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

MpolymorphaCyc

Content Statistics

Number of Pathways:

422

Number of Reactions:

2711

Number of Compounds:

1990

Number of Enzymes:

4841

Number of Citations:

3411

OpunctataCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza punctata

Protein Sequence Source:

EnsemblPlants v34: Oryza_punctata.AVCL00000000.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OpunctataCyc

Content Statistics

Number of Pathways:

484

Number of Reactions:

3022

Number of Compounds:

2271

Number of Enzymes:

8371

Number of Citations:

3907

AcoeruleaCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Aquilegia coerulea

Protein Sequence Source:

Phytozome v12: Acoerulea_322_v3.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

AcoeruleaCyc

Content Statistics

Number of Pathways:

493

Number of Reactions:

3120

Number of Compounds:

2327

Number of Enzymes:

9985

Number of Citations:

3943

RmultifloraCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Rosa multiflora

Protein Sequence Source:

Kazusa Genome Database: RMU_r2.0.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RmultifloraCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3279

Number of Compounds:

2481

Number of Enzymes:

13358

Number of Citations:

4030

Carietinum_Icc4958Cyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Cicer arietinum ICC4958

Protein Sequence Source:

CSFL: Ca_Pep_v2.fasta.txt

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Carietinum_Icc4958Cyc

Content Statistics

Number of Pathways:

493

Number of Reactions:

3236

Number of Compounds:

2363

Number of Enzymes:

6633

Number of Citations:

3937

SweetcherryCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Prunis avium

Protein Sequence Source:

PAV_r1.0.proteins.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SweetcherryCyc

Content Statistics

Number of Pathways:

501

Number of Reactions:

3130

Number of Compounds:

2341

Number of Enzymes:

6757

Number of Citations:

3985

CornCyc 11.0.0

Parent

Overview

Released:

Taxonomic Range:

Zeamays mays

Protein Sequence Source:

EnsemblPlants v55: Zea_mays.Zm-B73-REFERENCE-NAM-5.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc and MaizeGDB based on experimental evidence or curator inference

Link to PGDB:

CornCyc

Content Statistics

Number of Pathways:

521

Number of Reactions:

3230

Number of Compounds:

2558

Number of Enzymes:

16392

Number of Citations:

4270

GinkgoCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Ginkgo biloba

Protein Sequence Source:

GIGA DB: Ginkgo_biloba.HiC.protein.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

GinkgoCyc

Content Statistics

Number of Pathways:

453

Number of Reactions:

2958

Number of Compounds:

2225

Number of Enzymes:

7884

Number of Citations:

3674

MpusillaCyc 3.0.2

Parent

Overview

Released:

Micromonas pusilla CCMP1545

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: MpusillaCCMP1545_228_v3.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MpusillaCyc

Content Statistics

Number of Pathways:

301

Number of Reactions:

2085

Number of Compounds:

1539

Number of Enzymes:

1971

Number of Citations:

2775

OrufipogonCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza rufipogon

Protein Sequence Source:

EnsemblPlants v34: Oryza_rufipogon.OR_W1943.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OrufipogonCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3118

Number of Compounds:

2331

Number of Enzymes:

8833

Number of Citations:

3961

AhalleriCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis halleri

Protein Sequence Source:

Phytozome v13: Ahalleri_765_v2.1.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AhalleriCyc

Content Statistics

Number of Pathways:

476

Number of Reactions:

2995

Number of Compounds:

2266

Number of Enzymes:

9165

Number of Citations:

RubbertreeCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Hevea brasiliensis

Protein Sequence Source:

Rubber Genome & Transcriptome Database: hevea_amino.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RubbertreeCyc

Content Statistics

Number of Pathways:

516

Number of Reactions:

3334

Number of Compounds:

2526

Number of Enzymes:

9810

Number of Citations:

4055

CarnationCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Dianthus caryophyllus

Protein Sequence Source:

Kazusa Genome Database: DCA_r1.0_pep_woTE.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CarnationCyc

Content Statistics

Number of Pathways:

490

Number of Reactions:

3106

Number of Compounds:

2340

Number of Enzymes:

7514

Number of Citations:

3977

SweetorangeCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Citrus sinensis

Protein Sequence Source:

Phytozome v12: Csinensis_154_v1.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SweetorangeCyc

Content Statistics

Number of Pathways:

493

Number of Reactions:

3144

Number of Compounds:

2343

Number of Enzymes:

11605

Number of Citations:

3963

CroseusCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Catharanthus roseus

Protein Sequence Source:

Medicinal Plant Genomics Resource: cro_ap_asm_v2.proteins.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CroseusCyc

Content Statistics

Number of Pathways:

500

Number of Reactions:

3069

Number of Compounds:

2299

Number of Enzymes:

5483

Number of Citations:

4023

GraimondiiCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Gossypium raimondii

Protein Sequence Source:

Phytozome v12: Graimondii_221_v2.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

GraimondiiCyc

Content Statistics

Number of Pathways:

490

Number of Reactions:

3141

Number of Compounds:

2350

Number of Enzymes:

18197

Number of Citations:

3881

MsinensisCyc 2.1.1

Parent

Overview

Released:

Taxonomic Range:

Miscanthus sinensis

Protein Sequence Source:

Phytozome v12: Msinensis_497_v7.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

MsinensisCyc

Content Statistics

Number of Pathways:

494

Number of Reactions:

3207

Number of Compounds:

2393

Number of Enzymes:

17547

Number of Citations:

3884

OryzaCyc 7.2.1

Parent

Overview

Released:

Oryza sativa japonica group

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Osativa_323_v7.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

OryzaCyc

Content Statistics

Number of Pathways:

606

Number of Reactions:

3846

Number of Compounds:

2988

Number of Enzymes:

8452

Number of Citations:

5212

AhypochondriacusCyc 3.0.2

Parent

Overview

Released:

Amaranthus hypochondriacus

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Ahypochondriacus_459_v2.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AhypochondriacusCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

2984

Number of Compounds:

2216

Number of Enzymes:

5496

Number of Citations:

3907

SacredlotusCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Nelumbo nucifera

Protein Sequence Source:

NCBI: GCF_000365185.1_Chinese_Lotus_1.1_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SacredlotusCyc

Content Statistics

Number of Pathways:

471

Number of Reactions:

2961

Number of Compounds:

2218

Number of Enzymes:

8966

Number of Citations:

3776

CarrotCyc 3.0.2

Parent

Overview

Released:

Daucus carota subsp. Sativus

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Dcarota_388_v2.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CarrotCyc

Content Statistics

Number of Pathways:

486

Number of Reactions:

3033

Number of Compounds:

2252

Number of Enzymes:

7185

Number of Citations:

3902

SwitchgrassCyc 7.0.2

Parent

Overview

Released:

Taxonomic Range:

Panicum virgatum

Protein Sequence Source:

Phytozome v12: Pvirgatum_450_v4.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SwitchgrassCyc

Content Statistics

Number of Pathways:

506

Number of Reactions:

3240

Number of Compounds:

2424

Number of Enzymes:

25703

Number of Citations:

3986

CrubellaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Capsella rubella

Protein Sequence Source:

Phytozome v12: Crubella_183_v1.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CrubellaCyc

Content Statistics

Number of Pathways:

472

Number of Reactions:

3015

Number of Compounds:

2201

Number of Enzymes:

6609

Number of Citations:

3647

GrapeCyc 10.0.0

Parent

Overview

Released:

Taxonomic Range:

Vitis vinifera

Protein Sequence Source:

Ensembl Plants v54:Vitis_vinifera.PN40024.v4.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

GrapeCyc

Content Statistics

Number of Pathways:

502

Number of Reactions:

3100

Number of Compounds:

2401

Number of Enzymes:

9470

Number of Citations:

461

MtruncatulaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Medicago truncatula

Protein Sequence Source:

INRA: MtrunA17r5.0-ANR.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MtruncatulaCyc

Content Statistics

Number of Pathways:

520

Number of Reactions:

3133

Number of Compounds:

2446

Number of Enzymes:

8934

Number of Citations:

297

OthomaeumCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oropetium thomaeum

Protein Sequence Source:

Phytozome v12: Othomaeum_386_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OthomaeumCyc

Content Statistics

Number of Pathways:

460

Number of Reactions:

2868

Number of Compounds:

2133

Number of Enzymes:

5389

Number of Citations:

3775

AlyrataCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis lyrata

Protein Sequence Source:

Phytozome v12: Alyrata_384_v2.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AlyrataCyc

Content Statistics

Number of Pathways:

484

Number of Reactions:

3057

Number of Compounds:

2229

Number of Enzymes:

7122

Number of Citations:

3725

SelaginellaCyc 8.0.2

Parent

Overview

Released:

Selaginella moellendorffii

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Smoellendorffii_91_v1.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SelaginellaCyc

Content Statistics

Number of Pathways:

422

Number of Reactions:

2799

Number of Compounds:

2086

Number of Enzymes:

6216

Number of Citations:

3436

CashewCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Anacardium occidentale

Protein Sequence Source:

Phytozome v12: Aoccidentale_449_v0.9.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CashewCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3150

Number of Compounds:

2355

Number of Enzymes:

18887

Number of Citations:

3976

TeaCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Camellia sinensis

Protein Sequence Source:

Tea Plant Information Archive:

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

TeaCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

2988

Number of Compounds:

2341

Number of Enzymes:

10876

Number of Citations:

218

HopCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Humulus lupulus

Protein Sequence Source:

HopBase v1.1: natsume.shinsuwase.v1.1.20160111.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

HopCyc

Content Statistics

Number of Pathways:

497

Number of Reactions:

3223

Number of Compounds:

2429

Number of Enzymes:

12074

Number of Citations:

3982

MuskmelonCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Cucumis melo

Protein Sequence Source:

Melonomics: CM4.0_protein.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MuskmelonCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

2979

Number of Compounds:

2183

Number of Enzymes:

5571

Number of Citations:

3873

PapayaCyc 8.0.2

Parent

Overview

Released:

Taxonomic Range:

Carica papaya

Protein Sequence Source:

Phytozome v12: Cpapaya_113_ASGPBv0.4.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PapayaCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

3114

Number of Compounds:

2312

Number of Enzymes:

5201

Number of Citations:

3825

SetariaCyc 7.1.1

Parent

Overview

Released:

Taxonomic Range:

Setaria italica

Protein Sequence Source:

Phytozome v11: Sitalica_312_v2.2.protein_primaryTranscriptOnly.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SetariaCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3053

Number of Compounds:

2269

Number of Enzymes:

9156

Number of Citations:

3876

CassavaCyc 10.0.0

Parent

Overview

Released:

Manihot esculenta esculenta

Taxonomic Range:

Protein Sequence Source:

Phytozome v13:Mesculenta_671_v8.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CassavaCyc

Content Statistics

Number of Pathways:

486

Number of Reactions:

3001

Number of Compounds:

2311

Number of Enzymes:

13324

Number of Citations:

184

TomatoCyc 6.0.0

Parent

Overview

Released:

Taxonomic Range:

Solanum lycopersicum

Protein Sequence Source:

SGN: ITAG4.1_proteins.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

TomatoCyc

Content Statistics

Number of Pathways:

537

Number of Reactions:

3182

Number of Compounds:

2595

Number of Enzymes:

7582

Number of Citations:

1131

CsubellipsoideaCyc 3.0.2

Parent

Overview

Released:

Coccomyxa subellipsoidea C-169

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: CsubellipsoideaC_169_227_v2.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CsubellipsoideaCyc

Content Statistics

Number of Pathways:

312

Number of Reactions:

2256

Number of Compounds:

1647

Number of Enzymes:

2266

Number of Citations:

2909

KfedtschenkoiCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Kalanchoe fedtschenkoi

Protein Sequence Source:

Phytozome v12: Kfedtschenkoi_382_v1.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

KfedtschenkoiCyc

Content Statistics

Number of Pathways:

482

Number of Reactions:

3061

Number of Compounds:

2293

Number of Enzymes:

10385

Number of Citations:

3833

Ntabacum_Tn90Cyc 3.0.2

Parent

Overview

Released:

SGN: Ntab-TN90_AYMY-SS_NGS.prot.annot.faa‚Äö√Ñ√£

Taxonomic Range:

Nicotiana tabacum TN90

Protein Sequence Source:

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Ntabacum_Tn90Cyc

Content Statistics

Number of Pathways:

547

Number of Reactions:

3403

Number of Compounds:

2601

Number of Enzymes:

14177

Number of Citations:

4370

PaxillarisCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Petunia axillaris

Protein Sequence Source:

SGN: Petunia_axillaris_v1.6.2_proteins.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PaxillarisCyc

Content Statistics

Number of Pathways:

505

Number of Reactions:

3217

Number of Compounds:

2422

Number of Enzymes:

8094

Number of Citations:

3971

AraCyc 17.2.0

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis thaliana col

Protein Sequence Source:

AraPort v11: Araport11_genes.201606.pep.repr.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AraCyc

Content Statistics

Number of Pathways:

650

Number of Reactions:

3793

Number of Compounds:

3029

Number of Enzymes:

8759

Number of Citations:

7268

SfallaxCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Sphagnum fallax

Protein Sequence Source:

Phytozome v13: Sfallax_522_v1.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SfallaxCyc

Content Statistics

Number of Pathways:

409

Number of Reactions:

2623

Number of Compounds:

2009

Number of Enzymes:

10195

Number of Citations:

CastorbeanCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Ricinus communis

Protein Sequence Source:

Phytozome v12: Rcommunis_119_v0.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CastorbeanCyc

Content Statistics

Number of Pathways:

521

Number of Reactions:

3756

Number of Compounds:

2835

Number of Enzymes:

6895

Number of Citations:

4067

TparvulaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Thellungiella parvula

Protein Sequence Source:

Thellungiella.org: TpV84ORFs.protein‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

TparvulaCyc

Content Statistics

Number of Pathways:

475

Number of Reactions:

3050

Number of Compounds:

2227

Number of Enzymes:

5908

Number of Citations:

3674

KlaxifloraCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Kalanchoe laxiflora

Protein Sequence Source:

Phytozome v12: Klaxiflora_309_v1.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

KlaxifloraCyc

Content Statistics

Number of Pathways:

472

Number of Reactions:

3023

Number of Compounds:

2259

Number of Enzymes:

16279

Number of Citations:

3809

ObarthiiCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza barthii

Protein Sequence Source:

Ensembl: Oryza_barthii.O.barthii_v1.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ObarthiiCyc

Content Statistics

Number of Pathways:

493

Number of Reactions:

3097

Number of Compounds:

2314

Number of Enzymes:

7994

Number of Citations:

3954

PhalliiCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Panicum hallii

Protein Sequence Source:

Phytozome v13Phallii_590_v3.2.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PhalliiCyc

Content Statistics

Number of Pathways:

480

Number of Reactions:

2933

Number of Compounds:

2238

Number of Enzymes:

8632

Number of Citations:

SoleraceaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Spinacia oleracea

Protein Sequence Source:

The Beta vulgaris Resource: SpiSet-1.genes.1408.pep‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SoleraceaCyc

Content Statistics

Number of Pathways:

490

Number of Reactions:

3016

Number of Compounds:

2228

Number of Enzymes:

5238

Number of Citations:

4032

CcampestrisCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Cuscuta campestris

Protein Sequence Source:

Cuscuta campestris Genome Project: data_cucam_0.32.annot.protein.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CcampestrisCyc

Content Statistics

Number of Pathways:

470

Number of Reactions:

2901

Number of Compounds:

2155

Number of Enzymes:

9592

Number of Citations:

3673

ValleyoakCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Quercus lobata

Protein Sequence Source:

Valley Oak Genome Project: Qlobata.v3.0.PCG.prot.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ValleyoakCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

3063

Number of Compounds:

2376

Number of Enzymes:

9378

Number of Citations:

CvariabilisCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Chlorella variabilis NC64A

Protein Sequence Source:

JGI: Chlorella_NC64A.fix_proteins.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CvariabilisCyc

Content Statistics

Number of Pathways:

334

Number of Reactions:

2441

Number of Compounds:

1756

Number of Enzymes:

17511

Number of Citations:

2938

LerCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis thaliana Ler

Protein Sequence Source:

NCBI: a_thaliana_thale_cress_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LerCyc

Content Statistics

Number of Pathways:

524

Number of Reactions:

3253

Number of Compounds:

2992

Number of Enzymes:

7073

Number of Citations:

8604

ObrachyanthaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza brachyantha

Protein Sequence Source:

EnsemblPlants v34: Oryza_brachyantha.Oryza_brachyantha.v1.4b.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ObrachyanthaCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3034

Number of Compounds:

2281

Number of Enzymes:

6227

Number of Citations:

3927

PigeonpeaCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Cajanus Cajan

Protein Sequence Source:

Legume Information System: cajca.ICPL87119.gnm1.ann1.Y27M.protein_main.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PigeonpeaCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3157

Number of Compounds:

2345

Number of Enzymes:

7345

Number of Citations:

3930

BananaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Musa acuminata

Protein Sequence Source:

Phytozome v12: Macuminata_304_v1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BananaCyc

Content Statistics

Number of Pathways:

480

Number of Reactions:

3027

Number of Compounds:

2266

Number of Enzymes:

9952

Number of Citations:

3875

SorghumbicolorCyc 7.1.1

Parent

Overview

Released:

Taxonomic Range:

Sorghum bicolor

Protein Sequence Source:

Phytozome v12: Sbicolor_454_v3.1.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SorghumbicolorCyc

Content Statistics

Number of Pathways:

492

Number of Reactions:

3064

Number of Compounds:

2297

Number of Enzymes:

9925

Number of Citations:

3887

CcapsularisCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Corchorus capsularis

Protein Sequence Source:

EnsemblPlants v38: Corchorus_capsularis.CCACVL1_1.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CcapsularisCyc

Content Statistics

Number of Pathways:

482

Number of Reactions:

2966

Number of Compounds:

2175

Number of Enzymes:

5217

Number of Citations:

3859

VcarteriCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Volvox carteri

Protein Sequence Source:

Phytozome v12: Vcarteri_317_v2.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

VcarteriCyc

Content Statistics

Number of Pathways:

321

Number of Reactions:

2272

Number of Compounds:

1635

Number of Enzymes:

2804

Number of Citations:

2788

CzofingiensisCyc 2.0.2

Parent

Overview

Released:

Chromochloris zofingiensis

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Czofingiensis_461_v5.2.3.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CzofingiensisCyc

Content Statistics

Number of Pathways:

332

Number of Reactions:

2567

Number of Compounds:

1925

Number of Enzymes:

2971

Number of Citations:

2920

LettuceCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Lactuca sativa

Protein Sequence Source:

Phytozome 12: Lsativa_467_v5.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LettuceCyc

Content Statistics

Number of Pathways:

502

Number of Reactions:

3161

Number of Compounds:

2354

Number of Enzymes:

14374

Number of Citations:

3869

Oeuropaea_SylvestrisCyc 2.1.1

Parent

Overview

Released:

Olea europaea var. sylvestris

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Oeuropaea_451_v1.0.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

Oeuropaea_SylvestrisCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

3073

Number of Compounds:

2305

Number of Enzymes:

8643

Number of Citations:

3889

PineappleCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Ananas comosus

Protein Sequence Source:

Phytozome v12: Acomosus_321_v3.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PineappleCyc

Content Statistics

Number of Pathways:

464

Number of Reactions:

2894

Number of Compounds:

2148

Number of Enzymes:

5698

Number of Citations:

3795

Boleracea_CapitataCyc 3.0.2

Parent

Overview

Released:

Brassica oleracea var. capitata

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Boleraceacapitata_446_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Boleracea_CapitataCyc

Content Statistics

Number of Pathways:

467

Number of Reactions:

2963

Number of Compounds:

2176

Number of Enzymes:

7598

Number of Citations:

3667

SoyCyc 10.1.0

Parent

Overview

Released:

Taxonomic Range:

Glycine max

Protein Sequence Source:

Phytozome v12: Gmax_275_Wm82.a2.v1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SoyCyc

Content Statistics

Number of Pathways:

589

Number of Reactions:

3472

Number of Compounds:

2698

Number of Enzymes:

19067

Number of Citations:

5316

CgiganteaCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Calotropis gigantea

Protein Sequence Source:

Medicinal Plant Genomics Resource: cal_hc_gene_models.rmscaff.repr.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CgiganteaCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

2985

Number of Compounds:

2227

Number of Enzymes:

4760

Number of Citations:

3871

WatermelonCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Citrullus lanatus

Protein Sequence Source:

CuGenDB: WCG_protein_v2.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

WatermelonCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

2887

Number of Compounds:

2149

Number of Enzymes:

4917

Number of Citations:

3854

DatepalmCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Phoenix dactylifera

Protein Sequence Source:

Date Palm Research Program: PDK30-pep.fsa.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

466

Number of Reactions:

2891

Number of Compounds:

2162

Number of Enzymes:

6043

Number of Citations:

3824

LjaponicusCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Lotus japonicus

Protein Sequence Source:

Phytozome v13: Ljaponicus_571_Lj1.0v1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LjaponicusCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

2933

Number of Compounds:

2278

Number of Enzymes:

6684

Number of Citations:

175

OglaberrimaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza glaberrima

Protein Sequence Source:

EnsemblPlants v34: Oryza_glaberrima.AGI1.1.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OglaberrimaCyc

Content Statistics

Number of Pathways:

494

Number of Reactions:

3042

Number of Compounds:

2288

Number of Enzymes:

6512

Number of Citations:

3921

PoplarCyc 13.0.0

Parent

Overview

Released:

Populus trichocarpa, other Populus species and hybrids

Taxonomic Range:

Protein Sequence Source:

Phytozome v13:Ptrichocarpa_533_v4.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PoplarCyc

Content Statistics

Number of Pathways:

494

Number of Reactions:

3048

Number of Compounds:

2340

Number of Enzymes:

11838

Number of Citations:

557

Boleracea_OleraceaCyc 3.0.2

Parent

Overview

Released:

Brassica oleracea var. oleracea

Taxonomic Range:

Protein Sequence Source:

EnsemblPlants v34: Brassica_oleracea.v2.1.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Boleracea_OleraceaCyc

Content Statistics

Number of Pathways:

481

Number of Reactions:

3136

Number of Compounds:

2292

Number of Enzymes:

12263

Number of Citations:

3709

SpennelliiCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Solanum pennellii

Protein Sequence Source:

SGN: Spenn-v2-aa-annot.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SpennelliiCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3176

Number of Compounds:

2355

Number of Enzymes:

7450

Number of Citations:

4013

CgrandifloraCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Capsella grandiflora

Protein Sequence Source:

Phytozome v12: Cgrandiflora_266_v1.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CgrandifloraCyc

Content Statistics

Number of Pathways:

471

Number of Reactions:

2983

Number of Compounds:

2173

Number of Enzymes:

6121

Number of Citations:

3626

WheataCyc 6.0.0

Parent

Overview

Released:

Taxonomic Range:

Triticum urartu

Protein Sequence Source:

EnsemblPlants v54: Triticum_urartu.IGDB.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

WheataCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

3028

Number of Compounds:

2342

Number of Enzymes:

11254

Number of Citations:

DrotundataCyc 3.0.0

Parent

Overview

Released:

Taxonomic Range:

Dioscorea rotundata

Protein Sequence Source:

EnsemblPlants v54: Dioscorea_rotundata.TDr96_F1_v2_PseudoChromosome.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

DrotundataCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3089

Number of Compounds:

2412

Number of Enzymes:

13229

Number of Citations:

LperrieriCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Leersia perrieri

Protein Sequence Source:

EnsemblPlants v34: Leersia_perrieri.Lperr_V1.4.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LperrieriCyc

Content Statistics

Number of Pathways:

488

Number of Reactions:

3018

Number of Compounds:

2258

Number of Enzymes:

8210

Number of Citations:

3902

OilpalmCyc 2.0.0

Parent

Overview

Released:

Taxonomic Range:

Elaeis guineensis

Protein Sequence Source:

Plaza Monocots 5.0: proteome.all_transcripts.egu.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OilpalmCyc

Content Statistics

Number of Pathways:

449

Number of Reactions:

2778

Number of Compounds:

2143

Number of Enzymes:

6350

Number of Citations:

PotatoCyc 7.0.0

Parent

Overview

Released:

Taxonomic Range:

Solanum tuberosum

Protein Sequence Source:

Phytozome v13:Stuberosum_686_v6.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PotatoCyc

Content Statistics

Number of Pathways:

527

Number of Reactions:

3211

Number of Compounds:

2534

Number of Enzymes:

11608

Number of Citations:

835

SpiderflowerCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Tarenaya hassleriana

Protein Sequence Source:

NCBI: GCF_000463585.1_ASM46358v1_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SpiderflowerCyc

Content Statistics

Number of Pathways:

472

Number of Reactions:

3017

Number of Compounds:

2210

Number of Enzymes:

9139

Number of Citations:

3643

ChinesecabbageCyc 8.0.0

Parent

Overview

Released:

Brassica rapa ssp. pekinensis

Taxonomic Range:

Protein Sequence Source:

BrassicaDB: Brara_Chiifu_V3.5_pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

ChinesecabbageCyc

Content Statistics

Number of Pathways:

471

Number of Reactions:

3040

Number of Compounds:

2309

Number of Enzymes:

20753

Number of Citations:

105

WheatdCyc 5.0.2

Parent

Overview

Released:

Taxonomic Range:

Aegilops tauschii

Protein Sequence Source:

EnsemblPlants v34: Aegilops_tauschii.ASM34733v1.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

WheatdCyc

Content Statistics

Number of Pathways:

520

Number of Reactions:

3611

Number of Compounds:

2703

Number of Enzymes:

57062

Number of Citations:

4060

EggplantCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Solanum melongena

Protein Sequence Source:

Kazusas Genome Database: SME_r2.5.1_pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

EggplantCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3215

Number of Compounds:

2372

Number of Enzymes:

6949

Number of Citations:

4089

MbalbisianaCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Musa balbisiana

Protein Sequence Source:

Banana Genome Hub: PKW_pep.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MbalbisianaCyc

Content Statistics

Number of Pathways:

475

Number of Reactions:

2877

Number of Compounds:

2138

Number of Enzymes:

7049

Number of Citations:

3832

OilseedrapeCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Brassica napus

Protein Sequence Source:

EnsemblPlants v34: Brassica_napus.AST_PRJEB5043_v1.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OilseedrapeCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3240

Number of Compounds:

2400

Number of Enzymes:

21070

Number of Citations:

4014

PpersicaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Prunus persica

Protein Sequence Source:

Phytozome v12: Ppersica_298_v2.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PpersicaCyc

Content Statistics

Number of Pathways:

499

Number of Reactions:

3053

Number of Compounds:

2267

Number of Enzymes:

10923

Number of Citations:

3965

Brapa_FpscCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Brassica rapa FPsc

Protein Sequence Source:

Phytozome v12: BrapaFPsc_277_v1.3.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Brapa_FpscCyc

Content Statistics

Number of Pathways:

481

Number of Reactions:

3047

Number of Compounds:

2218

Number of Enzymes:

9765

Number of Citations:

3731

SpirodelaCyc 5.0.2

Parent

Overview

Released:

Taxonomic Range:

Spirodela polyrhiza

Protein Sequence Source:

Phytozome v12: Spolyrhiza_290_v2.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SpirodelaCyc

Content Statistics

Number of Pathways:

455

Number of Reactions:

2748

Number of Compounds:

2017

Number of Enzymes:

4413

Number of Citations:

3653

ChlamyCyc 10.0.0

Parent

Overview

Released:

Chlamydomonas reinhardtii

Taxonomic Range:

Protein Sequence Source:

Phytozome v13: CreinhardtiiCC_4532_707_v6.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Primarily large-scale computational predictions of enzyme function not subject to curator review supplemented with data and references curated by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc and ChlamyCyc 1.0 (created by the GoFORSYS project at the Max Planck Institute of Molecular Plant Physiology) based on experimental evidence or curator inference

Link to PGDB:

ChlamyCyc

Content Statistics

Number of Pathways:

385

Number of Reactions:

2556

Number of Compounds:

1899

Number of Enzymes:

6413

Number of Citations:

3264

WildsugarcaneCyc 1.1.1

Parent

Overview

Released:

Taxonomic Range:

Saccharum spontanaeum

Protein Sequence Source:

The Ming Laboratory, University of Illinois: Sspon.v20190103.protein.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

WildsugarcaneCyc

Content Statistics

Number of Pathways:

500

Number of Reactions:

3217

Number of Compounds:

2422

Number of Enzymes:

19681

Number of Citations:

3953

EgrandisCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Eucalyptus grandis

Protein Sequence Source:

Phytozome v12: Egrandis_297_v2.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EgrandisCyc

Content Statistics

Number of Pathways:

506

Number of Reactions:

3136

Number of Compounds:

2355

Number of Enzymes:

11549

Number of Citations:

3983

McommodaCyc 3.0.2

Parent

Overview

Released:

Micromonas commoda RCC299

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: MspRCC299_229_v3.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

McommodaCyc

Content Statistics

Number of Pathways:

310

Number of Reactions:

2171

Number of Compounds:

1565

Number of Enzymes:

2044

Number of Citations:

2798

OlongistaminataCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza longistaminata

Protein Sequence Source:

Ensembl: Oryza_longistaminata.O_longistaminata_v1.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OlongistaminataCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3089

Number of Compounds:

2327

Number of Enzymes:

7031

Number of Citations:

3957

QuinoaCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Chenopodium quinoa

Protein Sequence Source:

Phytozome v12: Cquinoa_392_v1.0.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

QuinoaCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3141

Number of Compounds:

2357

Number of Enzymes:

10629

Number of Citations:

3952

StoraCyc 1.0.1

Parent

Overview

Released:

Taxonomic Range:

Senna tora

Protein Sequence Source:

NABIC: SETOT.complete.protein.20191226.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

StoraCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

2878

Number of Compounds:

2200

Number of Enzymes:

6587

Number of Citations:

1713

ClementineCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Citrus clementina

Protein Sequence Source:

Phytozome v12: Cclementina_182_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ClementineCyc

Content Statistics

Number of Pathways:

488

Number of Reactions:

3042

Number of Compounds:

2271

Number of Enzymes:

8423

Number of Citations:

3911

ZmarinaCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Zostera marina

Protein Sequence Source:

Phytozome v13: Zmarina_668_v3.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ZmarinaCyc

Content Statistics

Number of Pathways:

436

Number of Reactions:

2637

Number of Compounds:

1994

Number of Enzymes:

4635

Number of Citations:

EsalsugineumCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Eutrema salsugineum

Protein Sequence Source:

Phytozome v12: Esalsugineum_173_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

EsalsugineumCyc

Content Statistics

Number of Pathways:

477

Number of Reactions:

3014

Number of Compounds:

2194

Number of Enzymes:

6877

Number of Citations:

3662

MdomesticaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Malus domestica

Protein Sequence Source:

Phytozome v12: Mdomestica_196_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MdomesticaCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3179

Number of Compounds:

2392

Number of Enzymes:

10559

Number of Citations:

4068

AmborellaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Amborella trichopoda

Protein Sequence Source:

Phytozome v12: Atrichopoda_291_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

AmborellaCyc

Content Statistics

Number of Pathways:

472

Number of Reactions:

3074

Number of Compounds:

2290

Number of Enzymes:

5324

Number of Citations:

3835

AsparagusCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Asparagus officinalis

Protein Sequence Source:

Phytozome v12: Aofficinalis_498_V1.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

AsparagusCyc

Content Statistics

Number of Pathways:

462

Number of Reactions:

2974

Number of Compounds:

2245

Number of Enzymes:

5914

Number of Citations:

3777

BrachypodiumCyc 8.0.0

Parent

Overview

Released:

Taxonomic Range:

Brachypodium distachyon

Protein Sequence Source:

Phytozome v13:Bdistachyon_314_v3.1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

BrachypodiumCyc

Content Statistics

Number of Pathways:

470

Number of Reactions:

2976

Number of Compounds:

2306

Number of Enzymes:

11923

Number of Citations:

BreadwheatCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Triticum aestivum

Protein Sequence Source:

Phytozome v11 (early): Taestivum_296_v2.2.protein_primaryTranscriptOnly.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BreadwheatCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3271

Number of Compounds:

2473

Number of Enzymes:

30682

Number of Citations:

3994

Csativa_PkCyc 3.0.2

Parent

Overview

Released:

Cannabis sativa Purple Kush

Taxonomic Range:

Protein Sequence Source:

Cannabis genome project (http://genome.ccbr.utoronto.ca): canSat3_transcriptome-representative_ORFs.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Csativa_PkCyc

Content Statistics

Number of Pathways:

493

Number of Reactions:

3142

Number of Compounds:

2327

Number of Enzymes:

5872

Number of Citations:

3927

CucumberCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Cucumis sativus

Protein Sequence Source:

Phytozome v12: Csativus_122_v1.0.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CucumberCyc

Content Statistics

Number of Pathways:

481

Number of Reactions:

2917

Number of Compounds:

2154

Number of Enzymes:

7317

Number of Citations:

3894

PlantCyc 15.2.0

Parent

Overview

Released:

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method:

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

1164

Number of Reactions:

5392

Number of Compounds:

4899

Number of Enzymes:

4217

Number of Citations:

11042

PlantCyc 11.0

Parent

Overview

Released:

June 2016

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

All pathways have been manually imported from PMN databases or MetaCyc

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

1213

Enzymes:

140581

Reactions:

6051

Compounds:

5128

Citations:

11114

PlantCyc 10.0

Parent

Overview

Released:

June 2015

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

All pathways have been manually imported from PMN databases or MetaCyc

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

1214

Enzymes:

152416

Reactions:

6200

Compounds:

5138

Citations:

10960

PlantCyc 9.5

Parent

Overview

Released:

November 2014

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

All pathways have been manually imported from PMN databases or MetaCyc

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

1119

Enzymes:

189957

Reactions:

5475

Compounds:

4539

Citations:

9476

PlantCyc 9.0

Parent

Overview

Released:

September 2014

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

All pathways have been manually imported from PMN databases

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

1119

Enzymes:

189957

Reactions:

5475

Compounds:

4539

Citations:

9476

PlantCyc 8.0

Parent

Overview

Released:

November 2013

July 2013

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 350 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Functional Annotation Method:

Varies according to source: All enzymes have been imported from PMN databases or MetaCyc.

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

All pathways have been manually imported from PMN databases or MetaCyc

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

1050

Enzymes:

188798

Reactions:

5332

Compounds:

4410

Citations:

7634

PlantCyc 7.0

Parent

Overview

Released:

June 2013

August 2012

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 300 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Functional Annotation Method:

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

All pathways have been manually imported from PMN databases or MetaCyc

SAVI pathway validation lists:

NPP 3.0

UPP 3.0

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

978

Enzymes:

34663

Reactions:

3617

Compounds:

3455

Citations:

7634

PlantCyc 6.0

Parent

Overview

Released:

March 2012

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 300 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Protein Sequence Source:

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Functional Annotation Method:

Varies according to source: All enzymes have been imported from PMN databases, MetaCyc, LycoCyc, RiceCyc, or MedicCyc.

Enzyme Evidence:

Substantial manual curation of enzymes
In addition, large-scale computational predictions of enzyme function not subject to curator review

Pathway Prediction Program:

All pathways have been manually imported from PMN databases or MetaCyc

SAVI pathway validation lists:

NPP 2.0

UPP 2.0

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

898

Enzymes:

27652

Reactions:

3421

Compounds:

3334

Citations:

6939

PlantCyc 5.0

Parent

Overview

Released:

April 2011

PlantCyc is a metabolic pathway reference database containing more than 800 pathways and their catalytic enzymes and genes, as well as compounds from over 300 plant species (See Database Statistics).

The majority of the pathways have been curated from experimental literature by curators at the PMN and collaborators' sites. In addition, PlantCyc includes hypothetical pathways that are published in peer-reviewed journals based on the educated conjectures of experts, and computationally predicted pathways that have been manually validated by PMN curators.
Similarly, enzymes in PlantCyc may have experimental support or may be based solely on computational predictions.
For both pathways and enzymes, evidence codes are assigned to clearly indicate the type of support associated with these database items.

Taxonomic Range:

Link to PGDB:

Content Statistics

Pathways:

810

Enzymes:

11217

Reactions:

3167

Compounds:

3146

Citations:

5734

PlantCyc 4.0

Parent

Overview

Released:

June 2010

Taxonomic Range:

Link to PGDB:

Content Statistics

Pathways:

762

Enzymes:

11058

Reactions:

2929

Compounds:

2966

Citations:

5204

PlantCyc 3.0

Parent

Overview

Released:

October 2009

Taxonomic Range:

Link to PGDB:

Content Statistics

Pathways:

714

Enzymes:

10964

Reactions:

2709

Compounds:

2679

Citations:

4803

PlantCyc 2.0

Parent

Overview

Released:

March 2009

Taxonomic Range:

Link to PGDB:

Content Statistics

Pathways:

581

Enzymes:

8558

Reactions:

2501

Compounds:

2464

Citations:

4971

PlantCyc 1.0

Parent

Overview

Released:

June 2008

Taxonomic Range:

Link to PGDB:

Content Statistics

Pathways:

508

Enzymes:

3389

Reactions:

2277

Compounds:

2314

Citations:

4208

PigeonpeaCyc 1.0.1

Parent

Overview

Released:

Taxonomic Range:

Cajanus Cajan

Protein Sequence Source:

Legume Information System: cajca.ICPL87119.gnm1.ann1.Y27M.protein_main.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PigeonpeaCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3157

Number of Compounds:

2346

Number of Enzymes:

7345

Number of Citations:

3911

WheatdCyc 5.0

Parent

Overview

Released:

Taxonomic Range:

Aegilops tauschii

Protein Sequence Source:

EnsemblPlants v34: Aegilops_tauschii.ASM34733v1.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

WheatdCyc

Content Statistics

Number of Pathways:

520

Number of Reactions:

3611

Number of Compounds:

2704

Number of Enzymes:

57062

Number of Citations:

4034

RchinensisCyc 2.0.1

Parent

Overview

Released:

Taxonomic Range:

Rosa chinensis

Protein Sequence Source:

INRA: OBDH_1.0_sequences_prot.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RchinensisCyc

Content Statistics

Number of Pathways:

509

Number of Reactions:

3200

Number of Compounds:

2413

Number of Enzymes:

8938

Number of Citations:

4027

EggplantCyc 2.0

Parent

Overview

Released:

Taxonomic Range:

Solanum melongena

Protein Sequence Source:

Kazusas Genome Database: SME_r2.5.1_pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

EggplantCyc

Content Statistics

Number of Pathways:

508

Number of Reactions:

3215

Number of Compounds:

2375

Number of Enzymes:

6949

Number of Citations:

4070

VcarteriCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Volvox carteri

Protein Sequence Source:

Phytozome v12: Vcarteri_317_v2.1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

VcarteriCyc

Content Statistics

Number of Pathways:

321

Number of Reactions:

2272

Number of Compounds:

1635

Number of Enzymes:

2804

Number of Citations:

2788

CzofingiensisCyc 2.0.2

Parent

Overview

Released:

Chromochloris zofingiensis

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Czofingiensis_461_v5.2.3.2.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CzofingiensisCyc

Content Statistics

Number of Pathways:

332

Number of Reactions:

2567

Number of Compounds:

1925

Number of Enzymes:

2971

Number of Citations:

2920

DatepalmCyc 1.0.1

Parent

Overview

Released:

Taxonomic Range:

Phoenix dactylifera

Protein Sequence Source:

Date Palm Research Program: PDK30-pep.fsa.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

466

Number of Reactions:

2891

Number of Compounds:

2164

Number of Enzymes:

6043

Number of Citations:

3805

CashewCyc 2.0.1

Parent

Overview

Released:

Taxonomic Range:

Anacardium occidentale

Protein Sequence Source:

Phytozome v12: Aoccidentale_449_v0.9.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CashewCyc

Content Statistics

Number of Pathways:

496

Number of Reactions:

3150

Number of Compounds:

2357

Number of Enzymes:

18887

Number of Citations:

3957

CgiganteaCyc 2.0

Parent

Overview

Released:

Taxonomic Range:

Calotropis gigantea

Protein Sequence Source:

Medicinal Plant Genomics Resource: cal_hc_gene_models.rmscaff.repr.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CgiganteaCyc

Content Statistics

Number of Pathways:

483

Number of Reactions:

2985

Number of Compounds:

2230

Number of Enzymes:

4760

Number of Citations:

3852

LettuceCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Lactuca sativa

Protein Sequence Source:

Phytozome 12: Lsativa_467_v5.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LettuceCyc

Content Statistics

Number of Pathways:

502

Number of Reactions:

3161

Number of Compounds:

2354

Number of Enzymes:

14374

Number of Citations:

3869

RedcloverCyc 3.0.1

Parent

Overview

Released:

Taxonomic Range:

Trifolium pratense

Protein Sequence Source:

Phytozome v12: Tpratense_385_v2.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

RedcloverCyc

Content Statistics

Number of Pathways:

507

Number of Reactions:

3209

Number of Compounds:

2406

Number of Enzymes:

8860

Number of Citations:

3958

OthomaeumCyc 3.0

Parent

Overview

Released:

Taxonomic Range:

Oropetium thomaeum

Protein Sequence Source:

Phytozome v12: Othomaeum_386_v1.0.protein.fa‚Äã

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

OthomaeumCyc

Content Statistics

Number of Pathways:

460

Number of Reactions:

2868

Number of Compounds:

2135

Number of Enzymes:

5389

Number of Citations:

3756

ObrachyanthaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Oryza brachyantha

Protein Sequence Source:

EnsemblPlants v34: Oryza_brachyantha.Oryza_brachyantha.v1.4b.pep.all.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ObrachyanthaCyc

Content Statistics

Number of Pathways:

489

Number of Reactions:

3034

Number of Compounds:

2281

Number of Enzymes:

6227

Number of Citations:

3927

MpusillaCyc 3.0.1

Parent

Overview

Released:

Micromonas pusilla CCMP1545

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: MpusillaCCMP1545_228_v3.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MpusillaCyc

Content Statistics

Number of Pathways:

301

Number of Reactions:

2085

Number of Compounds:

1539

Number of Enzymes:

1971

Number of Citations:

2755

McommodaCyc 3.0

Parent

Overview

Released:

Micromonas commoda RCC299

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: MspRCC299_229_v3.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

McommodaCyc

Content Statistics

Number of Pathways:

310

Number of Reactions:

2171

Number of Compounds:

1564

Number of Enzymes:

2044

Number of Citations:

2778

DatepalmCyc 1.0

Parent

Overview

Released:

Taxonomic Range:

Phoenix dactylifera

Protein Sequence Source:

Date Palm Research Program: PDK30-pep.fsa.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

466

Number of Reactions:

2891

Number of Compounds:

2164

Number of Enzymes:

6043

Number of Citations:

3805

PigeonpeaCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Cajanus Cajan

Protein Sequence Source:

Legume Information System: cajca.ICPL87119.gnm1.ann1.Y27M.protein_main.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PigeonpeaCyc

Content Statistics

Number of Pathways:

498

Number of Reactions:

3157

Number of Compounds:

2345

Number of Enzymes:

7345

Number of Citations:

3930

ClementineCyc 3.0.1

Parent

Overview

Released:

Taxonomic Range:

Citrus clementina

Protein Sequence Source:

Phytozome v12: Cclementina_182_v1.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ClementineCyc

Content Statistics

Number of Pathways:

488

Number of Reactions:

3042

Number of Compounds:

2273

Number of Enzymes:

8423

Number of Citations:

3892

CarrotCyc 3.0

Parent

Overview

Released:

Daucus carota subsp. Sativus

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Dcarota_388_v2.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

CarrotCyc

Content Statistics

Number of Pathways:

486

Number of Reactions:

3033

Number of Compounds:

2253

Number of Enzymes:

7185

Number of Citations:

3883

SoleraceaCyc 3.0.1

Parent

Overview

Released:

Taxonomic Range:

Spinacia oleracea

Protein Sequence Source:

The Beta vulgaris Resource: SpiSet-1.genes.1408.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SoleraceaCyc

Content Statistics

Number of Pathways:

490

Number of Reactions:

3016

Number of Compounds:

2229

Number of Enzymes:

5237

Number of Citations:

4013

GrapeCyc 9.0

Parent

Overview

Released:

Taxonomic Range:

Vitis vinifera

Protein Sequence Source:

EnsemblPlants: Vitis_vinifera.12X.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

GrapeCyc

Content Statistics

Number of Pathways:

500

Number of Reactions:

3149

Number of Compounds:

2391

Number of Enzymes:

7448

Number of Citations:

4035

SoleraceaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Spinacia oleracea

Protein Sequence Source:

The Beta vulgaris Resource: SpiSet-1.genes.1408.pep‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

SoleraceaCyc

Content Statistics

Number of Pathways:

490

Number of Reactions:

3016

Number of Compounds:

2228

Number of Enzymes:

5238

Number of Citations:

4032

CcapsularisCyc 2.0.2

Parent

Overview

Released:

Taxonomic Range:

Corchorus capsularis

Protein Sequence Source:

EnsemblPlants v38: Corchorus_capsularis.CCACVL1_1.0.pep.all.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

CcapsularisCyc

Content Statistics

Number of Pathways:

482

Number of Reactions:

2966

Number of Compounds:

2175

Number of Enzymes:

5217

Number of Citations:

3859

TeaCyc 1.0.1

Parent

Overview

Released:

Taxonomic Range:

Camellia sinensis

Protein Sequence Source:

Tea Plant Information Archive: Teatree_Protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

TeaCyc

Content Statistics

Number of Pathways:

484

Number of Reactions:

3069

Number of Compounds:

2307

Number of Enzymes:

8505

Number of Citations:

3884

LerCyc 1.0

Parent

Overview

Released:

Taxonomic Range:

Arabidopsis thaliana Ler

Protein Sequence Source:

NCBI: a_thaliana_thale_cress_protein.faa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LerCyc

Content Statistics

Number of Pathways:

524

Number of Reactions:

3253

Number of Compounds:

2996

Number of Enzymes:

7073

Number of Citations:

8585

PaxillarisCyc 2.0.1

Parent

Overview

Released:

Taxonomic Range:

Petunia axillaris

Protein Sequence Source:

SGN: Petunia_axillaris_v1.6.2_proteins.fasta

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

PaxillarisCyc

Content Statistics

Number of Pathways:

505

Number of Reactions:

3217

Number of Compounds:

2425

Number of Enzymes:

8094

Number of Citations:

3946

RmultifloraCyc 2.0

Parent

Overview

Released:

Taxonomic Range:

Rosa multiflora

Protein Sequence Source:

Kazusa Genome Database: RMU_r2.0.pep

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

RmultifloraCyc

Content Statistics

Number of Pathways:

512

Number of Reactions:

3279

Number of Compounds:

2483

Number of Enzymes:

13358

Number of Citations:

4011

WatermelonCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Citrullus lanatus

Protein Sequence Source:

CuGenDB: WCG_protein_v2.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

WatermelonCyc

Content Statistics

Number of Pathways:

474

Number of Reactions:

2887

Number of Compounds:

2149

Number of Enzymes:

4917

Number of Citations:

3854

DatepalmCyc 1.0.2

Parent

Overview

Released:

Taxonomic Range:

Phoenix dactylifera

Protein Sequence Source:

Date Palm Research Program: PDK30-pep.fsa.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

466

Number of Reactions:

2891

Number of Compounds:

2162

Number of Enzymes:

6043

Number of Citations:

3824

MosobambooCyc 1.0.1

Parent

Overview

Released:

Taxonomic Range:

Phyllostachys edulis

Protein Sequence Source:

GIGA DB: Bamboo.Hic.pep.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

MosobambooCyc

Content Statistics

Number of Pathways:

484

Number of Reactions:

3108

Number of Compounds:

2340

Number of Enzymes:

12574

Number of Citations:

3845

ZmarinaCyc 3.0.1

Parent

Overview

Released:

Taxonomic Range:

Zostera marina

Protein Sequence Source:

Phytozome v12: Zmarina_324_v2.2.protein.fa‚Äã

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

ZmarinaCyc

Content Statistics

Number of Pathways:

436

Number of Reactions:

2672

Number of Compounds:

1967

Number of Enzymes:

4638

Number of Citations:

3468

AsparagusCyc 2.0

Parent

Overview

Released:

Taxonomic Range:

Asparagus officinalis

Protein Sequence Source:

Phytozome v12: Aofficinalis_498_V1.1.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

AsparagusCyc

Content Statistics

Number of Pathways:

462

Number of Reactions:

2974

Number of Compounds:

2247

Number of Enzymes:

5914

Number of Citations:

3757

LjaponicusCyc 4.0.0

Parent

Overview

Released:

Taxonomic Range:

Lotus japonicus

Protein Sequence Source:

Phytozome v13: Ljaponicus_571_Lj1.0v1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

LjaponicusCyc

Content Statistics

Number of Pathways:

487

Number of Reactions:

2933

Number of Compounds:

2278

Number of Enzymes:

6684

Number of Citations:

175

BananaCyc 3.0.2

Parent

Overview

Released:

Taxonomic Range:

Musa acuminata

Protein Sequence Source:

Phytozome v12: Macuminata_304_v1.protein.fa‚Äö√Ñ√£

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

BananaCyc

Content Statistics

Number of Pathways:

480

Number of Reactions:

3027

Number of Compounds:

2266

Number of Enzymes:

9952

Number of Citations:

3875

PineappleCyc 3.0.1

Parent

Overview

Released:

Taxonomic Range:

Ananas comosus

Protein Sequence Source:

Phytozome v12: Acomosus_321_v3.protein.fa‚Äã

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

PineappleCyc

Content Statistics

Number of Pathways:

464

Number of Reactions:

2894

Number of Compounds:

2149

Number of Enzymes:

5698

Number of Citations:

3776

SoyCyc 10.0

Parent

Overview

Released:

Taxonomic Range:

Glycine max

Protein Sequence Source:

Phytozome v12: Gmax_508_Wm82.a4.v1.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

SoyCyc

Content Statistics

Number of Pathways:

589

Number of Reactions:

3472

Number of Compounds:

2695

Number of Enzymes:

19055

Number of Citations:

5295

Oeuropaea_SylvestrisCyc 2.1.1

Parent

Overview

Released:

Olea europaea var. sylvestris

Taxonomic Range:

Protein Sequence Source:

Phytozome v12: Oeuropaea_451_v1.0.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction of pathways followed by SAVI refinement and curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

Oeuropaea_SylvestrisCyc

Content Statistics

Number of Pathways:

485

Number of Reactions:

3073

Number of Compounds:

2305

Number of Enzymes:

8643

Number of Citations:

3889

Ntabacum_Tn90Cyc 3.0.1

Parent

Overview

Released:

Taxonomic Range:

Nicotiana tabacum TN90

Protein Sequence Source:

SGN: Nitab-v4.5_proteins_Edwards2017.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Ntabacum_Tn90Cyc

Content Statistics

Number of Pathways:

547

Number of Reactions:

3403

Number of Compounds:

2603

Number of Enzymes:

14176

Number of Citations:

4351

MossCyc 8.0

Parent

Overview

Released:

Taxonomic Range:

Physcomitrella patens

Protein Sequence Source:

Phytozome v12: Ppatens_318_v3.3.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists: