CocoaCyc 1.0

Parent

Overview

Released:

Taxonomic Range:

Theobroma cacao

Protein Sequence Source:

Phytozome v12: Tcacao_233_v1.1.protein.fahttp://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Phytozome

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools v20.5 (primarily)

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

509

Enzymes:

5182

Reactions:

3192

Compounds:

2446

Citations:

3982