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PMN Data
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PMN Tools
BLAST
Run a gene or protein of interest through the PMN BLAST Server to find homologous proteins in species databases hosted at PMN
Metabolic Cluster Viewer
Find and view plant metabolic clusters that have been found using the PlantClusterFinder software
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Data Sets
Download the complete databases OR; lists of pathways, compounds, protein sequences, and SAVI files separately. A link to download PathwayTools software is also provided.
Software
Download our enzyme prediction software E2P2, pathway validation software SAVI, and gene cluster prediction software PlantClusterFinder. Download links for the PathwayTools API software PerlCyc and JavaCyc are provided.
Pathway Tools Biocyc Bundle
Download all pathway databases and PathwayTools software
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Omics Viewer Sample Data Files
Instructions on how to visualize experimental data in a global metabolic pathway context by using Cellular Omics Viewer. Two example files of experimental data are provided
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PlantCyc
AraCyc
ChlamyCyc
CornCyc
SoyCyc
OryzaCyc
Aagrestis_BonnCyc
Aagrestis_oxfordCyc
AangustusCyc
AcoeruleaCyc
AfilliculoidesCyc
AhalleriCyc
AhypochondriacusCyc
AlyrataCyc
AlyssumCyc
AmborellaCyc
AppleRingAcaciaCyc
ApunctatusCyc
AsparagusCyc
BambaraBeanCyc
BananaCyc
BarleyCyc
BlackPepperCyc
Boleracea_capitataCyc
Boleracea_oleraceaCyc
BrachypodiumCyc
Brapa_fpscCyc
BreadfruitCyc
BreadwheatCyc
BstrictaCyc
CacuminataCyc
CamelinaCyc
CannuumCyc
Carietinum_icc4958Cyc
CarnationCyc
CarrotCyc
CashewCyc
CassavaCyc
CastorbeanCyc
CcampestrisCyc
CcapsularisCyc
CgrandifloraCyc
CgiganteaCyc
ChinesecabbageCyc
ClementineCyc
CoastRedwoodCyc
CocoaCyc
CommonbeanCyc
CorkoakCyc
CroseusCyc
CrubellaCyc
Csativa_pkCyc
CsubellipsoideaCyc
CucumberCyc
CvariabilisCyc
CzofingiensisCyc
DatepalmCyc
DrabaCyc
DrotundataCyc
EggplantCyc
EgrandisCyc
EsalsugineumCyc
EuropeanpearCyc
FlaxCyc
Fvesca_vescaCyc
GamNuiCyc
GarlicCyc
GinkgoCyc
GraimondiiCyc
GrapeCyc
HaasAvocadoCyc
HopCyc
HuskTomatoCyc
JackfruitCyc
KfedtschenkoiCyc
KlaxifloraCyc
LerCyc
LettuceCyc
LjaponicusCyc
LperrieriCyc
MbalbisianaCyc
McommodaCyc
MdomesticaCyc
MexicanAvocadoCyc
MguttatusCyc
MoringaCyc
MosobambooCyc
MossCyc
MpolymorphaCyc
MpusillaCyc
MsinensisCyc
MtruncatulaCyc
MuskmelonCyc
Ntabacum_tn90Cyc
ObarthiiCyc
ObrachyanthaCyc
Oeuropaea_sylvestrisCyc
OglaberrimaCyc
OilpalmCyc
OilseedrapeCyc
OlongistaminataCyc
OlucimarinusCyc
OmeridionalisCyc
OnivaraCyc
OpunctataCyc
OrufipogonCyc
OthomaeumCyc
PapayaCyc
PaxillarisCyc
PhalliiCyc
PigeonpeaCyc
PineappleCyc
PocketWaterLilyCyc
PoplarCyc
PotatoCyc
PpersicaCyc
QuinoaCyc
RchinensisCyc
RedcloverCyc
RedsageCyc
RmultifloraCyc
RosemaryCyc
RubbertreeCyc
RyeCyc
SacredlotusCyc
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SetariaCyc
SfallaxCyc
SoleraceaCyc
SorghumbicolorCyc
SpennelliiCyc
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StoraCyc
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SweetWormwoodCyc
SwitchgrassCyc
TeaCyc
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TomatoCyc
TparvulaCyc
VcarteriCyc
WatermelonCyc
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