Several pathways have been updated based on new data concerning the pathway structure, intermediate compounds, or other types of information *. We have also recorded pathways with new Database IDs that do not have substantially revised content.
Pathway updates in PoplarCyc 2.0
- benzoyl-CoA biosynthesis [split from salicylate biosynthesis II, PWY-981]
- glycolysis II
- IAA biosynthesis I
- mannose degradation
- salicylate biosynthesis I [split from salicylate biosynthesis II, PWY-981]
- salicylate biosynthesis II
- sphingolipid biosynthesis
- trans-cinnamoyl-CoA biosynthesis [split from salicylate biosynthesis II, PWY-981]
- superpathway of carotenoid biosynthesis
Pathway ID changes in PoplarCyc 2.0
- 4-aminobutyrate degradation I
[old ID (4AMINOBUTMETAB-PWY)replaced by new ID (4AMINOBUTMETAB-PWY-ARA)] - beta-alanine biosynthesis I
[old ID (PWY-3981)replaced by new ID (PWY-3981-ARA)] - chorismate biosynthesis I
[old ID (ARO-PWY)replaced by new ID (ARO-PWY-ARA)] - methionine salvage pathway
[old ID (PWY-4361)replaced by new ID (PWY-4361-ARA)] - molybdenum cofactor biosynthesis
[old ID (PWY-5354)replaced by new ID ( PWY-5354-ARA)]
* Please note that in general, a pathway is not considered to be "updated" if the reactions and structure of the pathway remain the same, but, new enzymes have been assigned to the pathway, especially if the assignments are based on computational predictions.
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