Csativa_pkCyc 4.0.0

Parent

Overview

Released:

PMN 16 (July 2024)

Taxonomic Range:

Cannabis sativa

Protein Sequence Source:

Cannabis genome project (http://genome.ccbr.utoronto.ca): canSat3_transcriptome-representative_ORFs.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 28.0

SAVI pathway validation lists:

MCP 2.0
AIPP 7.0
CAPP 7.0
CVP 7.0
NPP 10.0
UPP 10.0

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

511

Number of Reactions:

3347

Number of Compounds:

2682

Number of Enzymes:

5790

Number of Citations:

4406