McommodaCyc 3.0

Parent

Overview

Released:

PMN 14.0 (January 2020)

Taxonomic Range:

Micromonas commoda RCC299

Protein Sequence Source:

Phytozome v12: MspRCC299_229_v3.0.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 23.0

SAVI pathway validation lists:

MCP 2.0
AIPP 6.0
CAPP 6.0
CVP 6.0
NPP 9.0
UPP 9.0

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

310

Number of Reactions:

2171

Number of Compounds:

1564

Number of Enzymes:

2044

Number of Citations:

2778