PMN Release 16.0

Release Information:

The data content of all 156 databases are described on our Content Statistics page while the data sources and methods for each database’s contruction are listed on the Databases Overview page

Past releases are described in the Release Notes Archives and Databases Overview Archives

Overall Highlights:

We are super excited to announce the release of PMN 16! PMN 16 introduces twenty-eight new single-species databases, listed below, as well as new versions of the existing 127 single-species databases and to PlantCyc, bringing our total to 155.  Selection of new species was focused on understudied plants and plant groups, including non-angiosperm plant such as hornworts and gymnosperms, as well as plants listed by the African Orphan Crop Consortium such as teff, moringa, and bambara groundnut. All databases were (re)generated using our new internal pipeline, making use of Pathway Tools 28.0, the new E2P2 version 5, and updated SAVI validation lists (SAVI 3.2). The first new enzyme data from our collaboration with the labs of Hiroshi Maeda (UW-Madison) and Philipp Zerbe (UC Davis) are also incorporated into this release, with more to come!

New databases in this release:

GarlicCyc (Allium sativum), Aagrestis_BonnCyc (Anthoceros agrestis Bonn), Aagrestis_oxfordCyc (Anthoceros agrestis Oxford), ApunctatusCyc (Anthoceros punctatus), AangustusCyc (Anthoceros angustus), SweetWormwoodCyc (Artemisia annua), JackfruitCyc (Artocarpus heterophyllus), BreadfruitCyc (Artocarpus altilis), AfilliculoidesCyc (Azolla filiculoides), CamelinaCyc (Camelina sativa), DrabaCyc (Draba nivalis), TeffCyc (Eragrostis tef), AppleRingAcaciaCyc (Faidherbia albida), StrawberryCyc (Fragaria x ananassa), GamNuiCyc (Gnetum montanum), AlyssumCyc (Lobularia maritima), MoringaCyc (Moringa oleifera), PocketWaterLilyCyc (Nymphaea colorata), MexicanAvocadoCyc (Persea americana drymifolia), HaasAvocadoCyc (Persea americana americana), HuskTomatoCyc (Physalis pubescens), BlackPepperCyc (Piper nigrum), RosemaryCyc (Salvia rosmarinus), WatermossCyc (Salvinia cucullata), RyeCyc (Secale cereale), CoastRedwoodCyc (Sequoia sempervirens), VanillaCyc (Vanilla planifolia), and BambaraBeanCyc (Vigna subterranea)

Name Pathways Enzymes Reactions Compounds Citations
PlantCyc 1162 4549 5477 4906 11885
AraCyc 618 10038 3837 3080 7656
ChlamyCyc 375 6633 2854 2081 4270
CornCyc 512 16347 3475 2769 5238
SoyCyc 546 19410 3543 2803 5381
OryzaCyc 524 8338 3439 2736 5305
GarlicCyc 388 2833 2341 2028 3338
Aagrestis_BonnCyc 309 1809 1802 1579 2652
Aagrestis_oxfordCyc 289 1725 1673 1459 2425
ApunctatusCyc 305 1451 1755 1502 2528
AangustusCyc 284 640 1587 1385 2431
SweetWormwoodCyc 420 2967 2566 2176 3541
JackfruitCyc 371 1667 2182 1906 3173
BreadfruitCyc 353 1540 2059 1782 3095
AfilliculoidesCyc 303 941 1731 1484 2673
CamelinaCyc 415 4221 2715 2263 3697
DrabaCyc 333 1409 1901 1691 2833
TeffCyc 421 2903 2613 2239 3759
AppleRingAcaciaCyc 367 1410 2071 1771 3125
StrawberryCyc 357 5344 2166 1909 3218
GamNuiCyc 331 1582 1900 1693 2784
AlyssumCyc 333 1211 1938 1687 2738
MoringaCyc 312 887 1805 1600 2576
PocketWaterLilyCyc 320 2195 1858 1581 2778
MexicanAvocadoCyc 328 1115 1898 1662 2745
HaasAvocadoCyc 318 1155 1839 1581 2680
HuskTomatoCyc 334 1362 1916 1670 2892
BlackPepperCyc 370 2380 2089 1829 3108
RosemaryCyc 392 2441 2295 1936 3337
WatermossCyc 301 760 1642 1396 2447
RyeCyc 377 2070 2175 1923 3231
CoastRedwoodCyc 432 6617 2795 2366 3789
VanillaCyc 310 1069 1740 1545 2504
BambaraBeanCyc 361 1400 2074 1771 3083
StoraCyc 345 1356 1961 1696 2982
MtruncatulaCyc 534 9212 3412 2773 4643
ChinesecabbageCyc 508 20905 3354 2666 4335
AhalleriCyc 503 9302 3265 2603 4274
BarleyCyc 493 7893 3092 2519 4373
BrachypodiumCyc 500 12097 3246 2638 4341
CacuminataCyc 506 6602 3244 2621 4362
CassavaCyc 519 13522 3364 2718 4528
DrotundataCyc 524 13260 3443 2808 4569
EuropeanpearCyc 503 8468 3257 2625 4372
Fvesca_vescaCyc 517 14504 3368 2726 4525
GrapeCyc 535 9360 3471 2834 4753
LjaponicusCyc 513 6690 3195 2593 4345
OilpalmCyc 467 6222 3041 2440 4127
PhalliiCyc 512 8553 3272 2643 4373
PoplarCyc 524 12053 3367 2703 4697
PotatoCyc 561 11678 3591 2906 5060
RchinensisCyc 523 9617 3442 2811 4533
SfallaxCyc 422 10646 2979 2398 3815
TeaCyc 513 10655 3285 2669 4437
TomatoCyc 562 7671 3546 2870 4880
ValleyoakCyc 531 9710 3449 2813 4600
WheataCyc 495 11450 3312 2695 4440
ZmarinaCyc 449 4494 2859 2284 3774
MbalbisianaCyc 492 6932 3074 2470 4268
Csativa_pkCyc 511 5790 3347 2682 4406
Carietinum_icc4958Cyc 513 6518 3469 2752 4527
WatermelonCyc 486 4786 3108 2546 4283
ObarthiiCyc 506 7943 3306 2686 4456
OlongistaminataCyc 511 6950 3274 2697 4441
OmeridionalisCyc 482 8563 3119 2595 4305
OnivaraCyc 508 8988 3248 2637 4384
WheatDCyc 546 81358 3808 3083 4851
OilseedrapeCyc 522 20946 3487 2801 4517
Boleracea_oleraceaCyc 504 12347 3319 2645 4247
CcapsularisCyc 503 5256 3179 2528 4381
LperrieriCyc 507 8095 3248 2660 4324
ObrachyanthaCyc 506 6138 3217 2607 4427
OglaberrimaCyc 494 6448 3162 2537 4263
OpunctataCyc 498 8322 3197 2578 4318
OrufipogonCyc 504 8787 3279 2653 4447
MosobambooCyc 520 12479 3338 2724 4521
GinkgoCyc 468 7282 3160 2554 4108
RedsageCyc 516 7233 3371 2731 4462
HopCyc 526 12061 3517 2838 4585
CvariabilisCyc 356 17711 2662 2090 3496
SweetcherryCyc 521 6897 3326 2695 4471
CarnationCyc 510 7737 3286 2702 4428
RmultifloraCyc 530 13808 3496 2861 4655
EggplantCyc 518 6997 3358 2685 4581
PigeonpeaCyc 518 7445 3393 2694 4476
CgiganteaCyc 490 4629 3205 2601 4236
CroseusCyc 515 5411 3318 2702 4499
MuskmelonCyc 493 5509 3139 2530 4329
LerCyc 309 7033 2875 2383 3135
SacredlotusCyc 498 8674 3210 2588 4296
SpiderflowerCyc 499 9087 3251 2604 4216
CorkoakCyc 542 15232 4191 3438 5112
AcoeruleaCyc 525 9730 3351 2687 4489
PineappleCyc 481 5511 3082 2484 4218
AhypochondriacusCyc 502 5422 3144 2560 4463
AlyrataCyc 506 6990 3306 2636 4311
CashewCyc 518 19150 3414 2757 4571
AsparagusCyc 494 5732 3230 2651 4324
AmborellaCyc 500 5242 3265 2662 4393
Boleracea_capitataCyc 480 7628 3114 2495 4040
Brapa_fpscCyc 505 9667 3279 2602 4270
BstrictaCyc 492 6734 3190 2531 4120
ClementineCyc 510 8480 3308 2672 4426
CgrandifloraCyc 491 6027 3169 2496 4135
PapayaCyc 493 5052 3248 2605 4197
QuinoaCyc 524 10520 3335 2683 4496
CrubellaCyc 498 6486 3227 2552 4193
CucumberCyc 495 7228 3142 2534 4344
SweetorangeCyc 514 11835 3378 2734 4491
CsubellipsoideaCyc 339 2373 2489 1971 3357
CzofingiensisCyc 358 3198 2773 2204 3416
CarrotCyc 497 7166 3233 2617 4412
EgrandisCyc 520 12168 3406 2782 4477
EsalsugineumCyc 485 6730 3193 2527 4047
MdomesticaCyc 524 10667 3485 2814 4591
GraimondiiCyc 506 18360 3398 2765 4482
SunflowerCyc 524 11463 3440 2779 4623
KfedtschenkoiCyc 504 10403 3312 2689 4413
KlaxifloraCyc 508 16221 3294 2670 4470
LettuceCyc 519 14776 3429 2790 4541
FlaxCyc 536 10564 3435 2778 4654
MguttatusCyc 496 7676 3247 2665 4363
MpolymorphaCyc 432 5159 2926 2327 3759
MpusillaCyc 323 2110 2283 1869 3133
MsinensisCyc 520 17581 3507 2813 4614
McommodaCyc 325 2176 2300 1865 3118
BananaCyc 500 9872 3159 2539 4325
Oeuropaea_sylvestrisCyc 507 8601 3320 2687 4472
OlucimarinusCyc 312 1797 2119 1743 3017
OthomaeumCyc 489 5409 3052 2443 4256
MossCyc 430 18964 3127 2483 3903
PpersicaCyc 514 11142 3299 2657 4424
SwitchgrassCyc 530 25856 3492 2866 4660
CommonbeanCyc 515 8794 3280 2610 4432
CastorbeanCyc 532 6978 4034 3254 4998
SorghumbicolorCyc 511 9869 3319 2695 4516
SetariaCyc 514 9162 3293 2676 4404
SelaginellaCyc 445 5466 3103 2495 3941
SpirodelaCyc 469 4179 2883 2304 3976
SviridisCyc 518 10579 3318 2705 4471
CocoaCyc 515 8863 3320 2686 4470
RedcloverCyc 575 9072 3796 3040 4923
BreadwheatCyc 576 30897 3888 3158 5116
VcarteriCyc 358 3117 2732 2115 3442
CcampestrisCyc 515 9559 3426 2789 4523
RubbertreeCyc 575 9880 3886 3187 5072
Ntabacum_tn90Cyc 605 14074 4008 3247 5384
CannuumCyc 568 8134 3730 3100 5081
PaxillarisCyc 570 8015 3788 3024 4898
SpennelliiCyc 559 7953 3714 2986 4830
SugarbeetCyc 527 5707 3529 2849 4726
SoleraceaCyc 528 5188 3451 2782 4733
WildsugarcaneCyc 571 19663 3855 3121 5017
TparvulaCyc 522 5839 3546 2841 4459
DatepalmCyc 528 5908 3380 2710 4526
TidestromiaCyc 486 8497 3106 2503 4235