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BLAST
Run a gene or protein of interest through the PMN BLAST Server to find homologous proteins in species databases hosted at PMN
Metabolic Cluster Viewer
Find and view plant metabolic clusters that have been found using the PlantClusterFinder software
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Download the complete databases OR; lists of pathways, compounds, protein sequences, and SAVI files separately. A link to download PathwayTools software is also provided.
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Download our enzyme prediction software E2P2, pathway validation software SAVI, and gene cluster prediction software PlantClusterFinder. Download links for the PathwayTools API software PerlCyc and JavaCyc are provided.
Pathway Tools Biocyc Bundle
Download all pathway databases and PathwayTools software
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Omics Viewer Sample Data Files
Instructions on how to visualize experimental data in a global metabolic pathway context by using Cellular Omics Viewer. Two example files of experimental data are provided
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PlantCyc
AraCyc
ChlamyCyc
CornCyc
SoyCyc
OryzaCyc
Aagrestis_BonnCyc
Aagrestis_oxfordCyc
AangustusCyc
AcoeruleaCyc
AfilliculoidesCyc
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AhypochondriacusCyc
AlyrataCyc
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AppleRingAcaciaCyc
ApunctatusCyc
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BlackPepperCyc
Boleracea_capitataCyc
Boleracea_oleraceaCyc
BrachypodiumCyc
Brapa_fpscCyc
BreadfruitCyc
BreadwheatCyc
BstrictaCyc
CacuminataCyc
CamelinaCyc
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Carietinum_icc4958Cyc
CarnationCyc
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CashewCyc
CassavaCyc
CastorbeanCyc
CcampestrisCyc
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CgrandifloraCyc
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ChinesecabbageCyc
ClementineCyc
CoastRedwoodCyc
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Csativa_pkCyc
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CucumberCyc
CvariabilisCyc
CzofingiensisCyc
DatepalmCyc
DrabaCyc
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EggplantCyc
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MsinensisCyc
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MuskmelonCyc
Ntabacum_tn90Cyc
ObarthiiCyc
ObrachyanthaCyc
Oeuropaea_sylvestrisCyc
OglaberrimaCyc
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OilseedrapeCyc
OlongistaminataCyc
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OmeridionalisCyc
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OthomaeumCyc
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MedicCyc
MedicCyc
Link to Additional Publications:
http://metacyc.org/MetaCycPublications.shtml
MedicCyc: a biochemical pathway database for Medicago truncatula