PoplarCyc 6.0

Parent

Overview
Released: 
November 2013
July 2013
June 2013

More information on PoplarCyc curation is available

Taxonomic Range: 
Populus trichocarpa
other Populus species and hybrids
Protein Sequence Source: 

Phytozome 9.0: Ptrichocarpa_v3.0_210_peptide.fa

Enzyme Functional Annotation Method: 

E2P2 2.0

Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 16.5
SAVI pathway validation lists: 
MCP 1.0
CAPP 1.0
AIPP 1.0
NPP 4.0
UPP 4.0
Pathway Evidence: 
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

The PMN is funded by the National Science Foundation (Grant #: 1546838, 1026003 and 0640769) and the Department of Energy (BER Grant #:  ER65472 ), governed by an Editorial Board composed of internationally renowned scientists, and executed at the Carnegie Institution for Science, Department of Plant Biology.