CommonbeanCyc 1.0

Parent

Overview

Released:

Taxonomic Range:

Phaseolus vulgaris

Protein Sequence Source:

Phytozome v11: Pvulgaris_218_v1.0.protein_primaryTranscriptOnly.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools v20.5 (primarily)

SAVI pathway validation lists:

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Pathways:

515

Enzymes:

5583

Reactions:

3144

Compounds:

2416

Citations:

3997