RedsageCyc 3.0

Taxonomic Range:
Salvia miltiorrhiza Bunge
Protein Sequence Source:

TCM Genome and Transcriptome Database: salvia_cds_pep.fa

Enzyme Functional Annotation Method:

E2P2v4.0

Enzyme Evidence:
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program
Pathway Tools 23.0
SAVI pathway validation list:

MCP 2.0
AIPP 6.0
CAPP 6.0
CVP 6.0
NPP 9.0
UPP 9.0

Pathway Evidence:
  • Substantial manual curation of pathways
  • Some computational prediction of pathways followed by curator review
  • Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Number of Pathways:
495
Number of Reactions:
3178
Number of Compounds:
2398
Number of Enzymes:
7361
Number of Citations:
3872