SoyCyc 3.0

SoyCyc 3.0

Taxonomic Range:
Protein Sequence Source:

Phytozome 7.0: Gmax_109_peptide.fa and JGI:Glyma1 (10-20-08)

Enzyme Functional Annotation Method:

E2P2 1.0 and process described in Zhang 2010

Enzyme Evidence:
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program
Pathway Tools 12.5 and 15.0
SAVI pathway validation list:
Pathway Evidence:
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB: SoyCyc

Number of Pathways:
441
Number of Reactions:
2566
Number of Compounds:
2007
Number of Enzymes:
13055
Number of Citations:
2762