TomatoCyc 3.0

Taxonomic Range:
Protein Sequence Source:

SGN: ITAG3.0_proteins.fasta

Enzyme Functional Annotation Method:
Enzyme Evidence:
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program
Pathway Tools v20.5
SAVI pathway validation list:
Pathway Evidence:
  • Primarily computational prediction of pathways followed by SAVI refinement and curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB: TomatoCyc

Number of Pathways:
535
Number of Reactions:
3279
Number of Compounds:
2682
Number of Enzymes:
6268
Number of Citations:
4388