LettuceCyc 1.0.2

Parent

Overview

Released:

PMN 15.5 (December 2022)

Taxonomic Range:

Lactuca sativa

Protein Sequence Source:

Phytozome 12: Lsativa_467_v5.protein.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 26.0

SAVI pathway validation lists:

MCP 2.0
AIPP 6.0
CAPP 6.0
CVP 6.0
NPP 9.0
UPP 9.0

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Content Statistics

Number of Pathways:

502

Number of Reactions:

3161

Number of Compounds:

2354

Number of Enzymes:

14374

Number of Citations:

3869