Author: admin
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PMN 15.0 Released!
We are pleased to announce the release of PMN 15. This release includes a new species, new features, and fixes to existing species:
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Downtime – July 8th
PMN Databases will be offline on July 8th due to datacenter maintenance
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New feature: Metabolic Cluster Viewer
4/7/2020 We are pleased to announce the launch of a new website feature, the Metabolic Cluster Viewer. We have run our PlantClusterFinder software on nine of the PMN species’ genomes, and the Cluster Viewer allows you to search and view the results without having to download and run the cluster finder yourself. The species currently…
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PMN 14.0 released!
We are pleased to announce the PMN14 release. In this release we introduce 25 new organism-specific metabolic pathway databases, which brings the total number of organism pathway databases to 125! New species include ten crops, six wild crop-relatives, three ornamentals, two oak trees, a model plant, our first gymnosperm, our first parasitic plant, and a…
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PMN13.0 released!
We are pleased to announce the PMN13 release. In this release we introduce 24 new organism-specific metabolic pathway databases, which brings the total number of organism pathway databases to 100! New species include nine crops, two medicinal plants, four ornamental plants, two wild relatives of domesticated crops, two grasses, a succulent, a basal eudicot, two…
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PMN12.5 released
We are pleased to announce PMN12.5 release. In this release we added locus IDs to genes in all PMN databases. The locus IDs were extracted from public genome releases that were used in constructing the PMN metabolic pathway databases. Protein sequence IDs from the genome releases are associated with proteins. The locus IDs, along with…
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PMN 12.0 released!
We are pleased to announce the PMN12 release. In this release we introduce 54 new species-specific metabolic pathway databases, which brings the total number of species-specific databases to 76. The 76 species cover the green plant lineage widely, including green algae, a moss, a club moss, a basal flowering plant, and higher plants of monocots…
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PMN 11.0 released!
We are pleased to announce the PMN11 release. Highlights include the addition of curated information of rate-limiting steps in over 50 pathways. To see an example, follow this link, http://pmn.plantcyc.org/PLANT/NEW-IMAGE?type=PATHWAY&object=PWY-695 To see a complete list of pathways with rate-limiting info, follow this link, http://pmn.plantcyc.org/group?id=pmn-prod.dpb.carnegiescience.edu-1-3673893209 Clicking on any pathway from the SmartTable, you will see a…
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PMN 10.0 released!
We are pleased to announce the PMN10 release. In this release, we introduce 5 new metabolic pathway databases for species including tomato, potato, two diploid progenitors of the bread wheat, Aegilops tauschii (D-genome) and Triticum Urartu (A-genome), and the great duckweed (Spirodela polyrhiza). We substantially updated the 17 existing species-specific databases and the multi-species database…
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PlantCyc 9.5 and PapayaCyc 3.5 release
11/5/2014 We are pleased to announce PlantCyc 9.5, which fixes a bug in PlantCyc (version 9.0), which was released on September 5, 2014. This bug was caused by internal ID conflict affected only P. patens and C. papaya enzyme annotations in PlantCyc (9.0). Overall, the incorrect annotations accounted for about 2% of total enzyme annotations…