Several pathways have been updated based on new data concerning the pathway structure, intermediate compounds, or other types of information *. We have also recorded pathways with new Database IDs that do not have substantially revised content.
Pathway updates in PlantCyc 4.0
- aliphatic glucosinolate biosynthesis, side chain elongation cycle
- benzoyl-CoA biosynthesis [split from salicylate biosynthesis II, PWY-981]
- beta alanine biosynthesis I
- ethylene biosynthesis from methionine
- glucosinolate biosynthesis from dihomomethionine
- glucosinolate biosynthesis from hexahomomethionine
- glucosinolate biosynthesis from homomethionine
- glucosinolate biosynthesis from pentahomomethionine
- glucosinolate biosynthesis from phenylalanine
- glucosinolate biosynthesis from tetrahomomethionine
- glucosinolate biosynthesis from trihomomethionine
- glucosinolate biosynthesis from tryptophan
- glycolysis II
- homomethionine biosynthesis
- IAA biosynthesis I
- mannose degradation
- rot-2'-enonate biosynthesis [split from rotenoid biosynthesis I, PWY-5775]
- rotenoid biosynthesis I
- salicylate biosynthesis I [split from salicylate biosynthesis II, PWY-981]
- salicylate biosynthesis II
- sorgoleone biosynthesis
- sphingolipid biosynthesis
- trans-cinnamoyl-CoA biosynthesis [split from salicylate biosynthesis II, PWY-981]
- UDP-D-glucuronate biosynthesis (from myo-inositol)
- uracil degradation (reductive)
- superpathway of carotenoid biosynthesis
Pathway ID changes in PlantCyc 4.0
- 4-aminobutyrate degradation I
[old ID (4AMINOBUTMETAB-PWY)replaced by new ID (4AMINOBUTMETAB-PWY-ARA)] - chorismate biosynthesis
[old ID (ARO-PWY)replaced by new ID (ARO-PWY-ARA)] - methionine salvage pathway
[old ID (PWY-4361)replaced by new ID (PWY-4361-ARA)] - molybdenum cofactor biosynthesis
[old ID (PWY-5354)replaced by new ID ( PWY-5354-ARA)]
* Please note that in general, a pathway is not considered to be "updated" if the reactions and structure of the pathway remain the same, but, new enzymes have been assigned to the pathway, especially if the assignments are based on computational predictions.
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