SoyCyc 2.0

Parent

Overview
Released: 
March 2012
Taxonomic Range: 
Glycine max
Protein Sequence Source: 

Phytozome 7.0: Gmax_109_peptide.fa and JGI:Glyma1 (10-20-08)

Enzyme Functional Annotation Method: 

E2P2 1.0 and process described in Zhang 2010

Enzyme Evidence: 
  • Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
  • Small number of manually curated enzymes
Pathway Prediction Program: 
Pathway Tools 12.5 and 15.0
SAVI pathway validation lists: 
NPP 2.0
UPP 2.0
Pathway Evidence: 
  • Primarily computational prediction followed by curator review
  • Additional pathways imported from MetaCyc based on experimental evidence or curator inference

The PMN is funded by the National Science Foundation (Grant #: 1546838, 1026003 and 0640769) and the Department of Energy (BER Grant #:  ER65472 ), governed by an Editorial Board composed of internationally renowned scientists, and executed at the Carnegie Institution for Science, Department of Plant Biology.