SoyCyc 2.0

Parent

Overview

Released:

Taxonomic Range:

Protein Sequence Source:

Phytozome 7.0: Gmax_109_peptide.fa and JGI:Glyma1 (10-20-08)

Enzyme Functional Annotation Method:

E2P2 1.0 and process described in Zhang 2010

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 12.5 and 15.0

SAVI pathway validation lists:

Pathway Evidence:

Primarily computational prediction followed by curator review
Additional pathways imported from MetaCyc based on experimental evidence or curator inference

Link to PGDB:

Content Statistics

Pathways:

412

Enzymes:

13094

Reactions:

2528

Compounds:

1987

Citations:

2673